Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3234 atggaTCACTACAGTTCTTCTGGAGGAAGCTGGACGATGATCCCAACTCacaattcaaatattcaatCTCAATCCCAATCGAACCAGGACTCTAACCTTTttcttcaacaacaacaacagtttCTCCAGCCACAACCTTTTCAGCAAGCACTACCGCCCCAATCTCCATTTCAACAGCAGCATCACCTTTATCAGCAGCAAcaacagcagcagcagcaacGTCTTCTACAGCAACAGCAACAGcaacagcagcagcagcagcagaaCCTTCACCAGTCGCTGGCCTCTCACTACCATCTCTTACATTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCAGATCAGCAGTCAGATgcattgATCAATGAATTGAGCAGCCACTTTGAGAAGTGCCAGCAGCTGTTAAACTCAATCTCTGGCTCCATTGGCACAAAGGCTATGACAGTTGAGGGACAGAAGGAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGCCAATTACAGAAAATCTGTTGAGGAGCTTACGCACTCAGTTCGTCTTAAAGTTTCCTTTGCTGCTAAACGGGAAACAGTAAAGATGTGCAAAATAGTAAAGAACCAGCTGGCTCTACTTGATGACTCTCAAGTCACTGGCAAGTCAACATTTGGGGCTCTTGGAGCTGATTCACTTGACACAGTTGAGATTGTGATGGGGATTGAGGGGGAATTTGGTATCAGTGTAGAAGATAGTGCGAGCATCTCAACAGTTCAGGAAACTGCAGATCTTATCGAGGAGATAATCAGTAAACAGAGTCCTTAG 825 0.4048 MDHYSSSGGSWTMIPTHNSNIQSQSQSNQDSNLFLQQQQQFLQPQPFQQALPPQSPFQQQHHLYQQQQQQQQQRLLQQQQQQQQQQQQNLHQSLASHYHLLHLVENLAEVIEHGTPDQQSDALINELSSHFEKCQQLLNSISGSIGTKAMTVEGQKEKLEESEQLLNQRRDLIANYRKSVEELTHSVRLKVSFAAKRETVKMCKIVKNQLALLDDSQVTGKSTFGALGADSLDTVEIVMGIEGEFGISVEDSASISTVQETADLIEEIISKQSP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3234 274 SUPERFAMILY ACP-like 202 272 IPR036736 -
Ssu4g3234 274 MobiDBLite consensus disorder prediction 1 30 - -
Ssu4g3234 274 Coils Coil 152 172 - -
Ssu4g3234 274 Coils Coil 65 89 - -
Ssu4g3234 274 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED 1 186 IPR038790 GO:0016592
Ssu4g3234 274 Hamap Acyl carrier protein [acpP]. 197 269 IPR003231 GO:0006633
Ssu4g3234 274 Gene3D - 198 272 IPR036736 -
Ssu4g3234 274 ProSitePatterns Phosphopantetheine attachment site. 226 241 IPR006162 -
Ssu4g3234 274 ProSiteProfiles Carrier protein (CP) domain profile. 196 272 IPR009081 -
Ssu4g3234 274 Pfam Phosphopantetheine attachment site 203 265 IPR009081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3234 Ssu-Chr4 81685211 81687729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3234 188 269 Acyl Lipid Metabolism Gene Families AT1G54580 56.471 1.55e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3234 - - gmx:100803884 197.593