LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3230	ATGATTGGCAGCATGAACCAGACTGATTCAATTGACTGCTGTAAAGCTGGAATGGAGAAAGCGGATTCTCAGGAATCTGGTCCTGCCTTGAAGAAGTCAAAAATCGAAATTTTGGCTTCTCAAAATGTAGATAACTGTGAAATGGCAGAAAGCGAGGACAGACTTAGTGAACTGCCGGATTGTCTTATTCAtcatattttgtcatttatgGAAACAAAAGATGCAATTAAAACTTGGGTTTTATCAAAGAGGTGGAAGTATCTTTGGGCTTTAGTTCCCTGCCTGAACTTCAACAGCAAATCATTCACGCGATTGGTTGATTTCAAGAAGTTTGTGCTGTGGGTGCTAAACCATCGTGAATCGTCTCATGTTAAACTTCTTGTTTACAATCGCTTTGGGGTAGATTATGCAACAGATCAAAATCTATTGAATAAGGTTATTGAGTATGCAGCAACACATGGGGTTgaagaaatcaaaatcaatctTCGGGCAAAAACCTCTGGCAGTCCTCCAGTTGAAATTCCCTTGTCTCTATTTACTTGCCAATCTTTGAAAAAGCTTGAGTTAAAAGATTGCCATCCTACGAATGTGTCATCCCCTTTAGGTTGCAAATCATTGGACTTGTTGCATCTGGAACAGTTTTCAATGTATCCTGCTGCAGCTGACTTTTCAAATCCATTTGCAAGTTTGGCAGAACTTTTTGGTTTTACAACATTGACAACCTTGCATCTCAATAACTTTACTCTGTGTTATACAGGAATTGACTGTCTGGATCCATTTGCTAAGTGTGTTCATTTGAAGAATTTGCACTTAAGTGAAATGTCCTTTAAGTCAGATTTAAACCCTAAGGACTTTGTGGTATCTGCTCCTAAACTcagtaacttaaatttaatgtgCAACCGCTTTAAATGCAAGATTGTAGTTGCTGCACCACAGCTTTCCAATTTCACTTACTTGTATTCTACACCGTGTGCCTTCTTTGAGTTTCGTCTTCCTTCTTTGGATGGTTTGATCATTGATATTCATGAACCACGTGATCGGCTGGAAAAATGTTGTcgaagaaaaaaagaggagaCTTTACATGGTTTAATCAATATGTTACAGGGACATCATAGTGCAGAAGCTGTTAAACTATCCTTCTGTACAGTTGAGgTTTCTTGTGGGAATGAAGCCCTGTTAAAGCGACAATGTTTGTCTTCTAGTAAATTGAAGTCATTGAACTTTGGAGTGGGATCAACATATAAAATCTTCATCAACAACCTTGACCATATAACTGCCTACTTCCGCAATTGTTCTCAGCATGCAGACTTTGAGATTGTGACTGTTTAA	1329	0.3664	MIGSMNQTDSIDCCKAGMEKADSQESGPALKKSKIEILASQNVDNCEMAESEDRLSELPDCLIHHILSFMETKDAIKTWVLSKRWKYLWALVPCLNFNSKSFTRLVDFKKFVLWVLNHRESSHVKLLVYNRFGVDYATDQNLLNKVIEYAATHGVEEIKINLRAKTSGSPPVEIPLSLFTCQSLKKLELKDCHPTNVSSPLGCKSLDLLHLEQFSMYPAAADFSNPFASLAELFGFTTLTTLHLNNFTLCYTGIDCLDPFAKCVHLKNLHLSEMSFKSDLNPKDFVVSAPKLSNLNLMCNRFKCKIVVAAPQLSNFTYLYSTPCAFFEFRLPSLDGLIIDIHEPRDRLEKCCRRKKEETLHGLINMLQGHHSAEAVKLSFCTVEVSCGNEALLKRQCLSSSKLKSLNFGVGSTYKIFINNLDHITAYFRNCSQHADFEIVTV	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3230	442	PANTHER	CYCLIN-LIKE F-BOX	39	442	-	-
	Ssu4g3230	442	Gene3D	-	39	91	-	-
	Ssu4g3230	442	PANTHER	F-BOX PROTEIN-LIKE	39	442	-	-
	Ssu4g3230	442	SUPERFAMILY	F-box domain	51	107	IPR036047	GO:0005515
	Ssu4g3230	442	Gene3D	Ribonuclease Inhibitor	140	336	IPR032675	-
	Ssu4g3230	442	Pfam	F-box domain	55	89	IPR001810	GO:0005515
	Ssu4g3230	442	SUPERFAMILY	L domain-like	172	328	-	-
	Ssu4g3230	442	ProSiteProfiles	F-box domain profile.	52	105	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3230	Ssu-Chr4	81631386	81632867	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3230	51	216	EF-hand Containing Proteins	AT5G41840	32.620	2.70e-13	69.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3230	-		-	vun:114167379	790.415