Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3226 ATGATTGGGGGTTACAATGCTGCCAAGGATGTCTTTGTCCCAAATAATGGATTTAATGAATTTGTGTTAAGATATGATTATGGAAAATACTATGCCTCAAAAACGTTCTTTGATCATGGAAAGAAGAGAAGGATTTTGCTAGGGTGGGTCAACGAATCCTCTAGTGTTGCGAATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCAATCTGGTTGCATAAGTCTGGTAAACAGGTGGTACAGTGGCCAGTGGTGGAAATTGAAAAGCTACGAGCAAACCTAGTCAACTTGCCCCCACAAGTACTAAAAGGAGGCCAGTTGCTTCAAATTAATGGTGTCACAGCAACACATGCTGATGTTGAGATATCATTTGAAGTGAGTAACTTGAGAAACGCTGAAGTATTGGACTATTGGATGGACCCCCAAATTCTGTGCAGTAAAAAGGGTTCAGCCGTTAAAAGTGGACTGGGCCCGTTTGGTCTGCTAGTTTTTGCTTCAAAGGGATTGCAAGAGTACACATCAATTTTCTTCAGAATATTCAGACACCAACACAAAAATTTGGTGCTCTTGTGCAGTGACCAAAGCAGGTCTTCCTTAAATAAAGACAATGATATGACCACTTATGGAACTTTTGTGGACGTGGACCCTCGTCATGAGAAACTTTCATTGAGAAGCTTGATTGATCATTCTGTCGTAGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCCAGAGTTTATCCCACACTGGCAATCAATGATAAAGCACAAATATATGCTTTCAATAATGGAACTGTTGATGTCAAGATCACAAGACTGAGTGCTTGGAGCATGAACAAAGCACAAATAAATTGA 870 0.408 MIGGYNAAKDVFVPNNGFNEFVLRYDYGKYYASKTFFDHGKKRRILLGWVNESSSVANDIKKGWSGIHTIPRAIWLHKSGKQVVQWPVVEIEKLRANLVNLPPQVLKGGQLLQINGVTATHADVEISFEVSNLRNAEVLDYWMDPQILCSKKGSAVKSGLGPFGLLVFASKGLQEYTSIFFRIFRHQHKNLVLLCSDQSRSSLNKDNDMTTYGTFVDVDPRHEKLSLRSLIDHSVVESFGGEGRACITARVYPTLAINDKAQIYAFNNGTVDVKITRLSAWSMNKAQIN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3226 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 87 285 IPR013320 -
Ssu4g3226 289 Gene3D - 98 283 - -
Ssu4g3226 289 SMART glyco_32 1 243 IPR001362 GO:0004553|GO:0005975
Ssu4g3226 289 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 87 IPR013148 -
Ssu4g3226 289 SUPERFAMILY Arabinanase/levansucrase/invertase 2 88 IPR023296 -
Ssu4g3226 289 PANTHER CELL-WALL INVERTASE 1 289 - -
Ssu4g3226 289 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 289 - -
Ssu4g3226 289 Gene3D Glycosyl hydrolase domain; family 43 1 97 IPR023296 -
Ssu4g3226 289 Pfam Glycosyl hydrolases family 32 C terminal 90 282 IPR013189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3226 Ssu-Chr4 81563096 81566154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3226 2 289 Glycoside Hydrolase AT3G13790 62.034 7.88e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3226 K01193 - gmx:547681 522.316