Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3216 ATGGCATCTCAAGGTTTGTGtccttcaataaaaaatattcttctttTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATTCAAAGTTAGCTTTTGAGAAGTTTGTATTTAGTAAGACCGTTAAGACAAATGCTCGTACGGAAGCTGAGGTTACACTACTTGAGAACAATatcattatttacaaatttgtaCAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAGCTCATTTTAGCATCAGTTCTTCAAGGtttctttgatgcaatcacCCTTCTGTTGagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTATGTCTTGATGAGATTGTTGACGGAGGGATGATTCTTGAGACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATAGCCCCTTGTCAGAGCAGACACTAACTCAAGCTTGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA 543 0.3683 MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAITLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADSPLSEQTLTQAWATAREHLTRTLLK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3216 180 PANTHER ZETA-COAT PROTEIN 5 180 IPR039652 GO:0006890|GO:0030126
Ssu4g3216 180 SUPERFAMILY SNARE-like 10 151 IPR011012 -
Ssu4g3216 180 PANTHER CLATHRIN ADAPTOR COMPLEX SMALL CHAIN 5 180 - -
Ssu4g3216 180 CDD Zeta-COP 11 146 - -
Ssu4g3216 180 Gene3D - 4 150 - -
Ssu4g3216 180 Pfam Clathrin adaptor complex small chain 10 149 IPR022775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3216 Ssu-Chr4 81460895 81463633 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3216 K20472 - gmx:100775726 335.88