Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3188 ATGGCATACGCATCTCACTTACTCAATCACTCCTCAAAGATGAGGAATGCTTCGAAGTTGCTGCAGCATGAGCGTGCTCTTTTGGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCCACCGGAATCGCGCTATGTGGCAATCTCAATTCCATGAGTCTTCAACAAGAAGCGGTGTCTTTGAACCGGCCTCCAGCTTTACTAAACGTTCATTTAGTGTACAGAAGAGAAATATCTCCATGGTTACCATTAAAAGGGGTTCCATTATTGGGTCTGGGTTCAATGGAGAGATTTCACGTTCACAGCTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGATCTCCCTCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAGTCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAAATGGAATGTATGGAGGAAGGTTATCTGGCCAAGATAATCCGTGGGGATgggcaaaaagaaataaaagttggTGAGGTAATCGCCATTACTGTTGAAGATGAGGGGGATATTGTGAAGTTTAAAGATTACCAACCTTCAGCATCTGAACCAAGTGCACCCCCTGCCAAGGAAACATCTGCCCCACCTCCACCAAAGAAAGAGGTGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCCAGTGCACCACCTTCATCTGGAGATCGCATATTTGCTAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAATATCACAGCTTCACGGCTATTGTTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGGCCTCGCATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCATTGGCTCTCCGTAAAGTTCCTCAATGTAACGGTTCATGGGCAAATGATTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCTGTGCAGACGGATCACGGGCTCTTTGTACCAGTCGTCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTTACGGTATCTAACCTGGGAGGGCCATTTGGTGTCAAACACTTCTGTGCAATCATCAATCCTCCTCAGTCGGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCATTCCAGGTTCTGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATTTCTGTGACACTCAGCTGTGATCATCGTGTTGTAGATGGTGCTATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA 1473 0.4426 MAYASHLLNHSSKMRNASKLLQHERALLVRWFSGDAQSSLHRNRAMWQSQFHESSTRSGVFEPASSFTKRSFSVQKRNISMVTIKRGSIIGSGFNGEISRSQLLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGQKEIKVGEVIAITVEDEGDIVKFKDYQPSASEPSAPPAKETSAPPPPKKEVVEEPAREPEPKVSKPSAPPSSGDRIFASPLARKLAEEKNITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTQLNSLQEASGGPRISVNDLVIKAAALALRKVPQCNGSWANDYIRQYHNVNINVAVQTDHGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKHFCAIINPPQSGILAVGSAERRVIPGSGAEEFKFASFISVTLSCDHRVVDGAIGAEWLKAFKGYIENPESMLL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3188 490 Gene3D - 113 219 - -
Ssu4g3188 490 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 143 172 IPR003016 -
Ssu4g3188 490 MobiDBLite consensus disorder prediction 207 256 - -
Ssu4g3188 490 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 269 490 - -
Ssu4g3188 490 Pfam Biotin-requiring enzyme 120 192 IPR000089 -
Ssu4g3188 490 ProSiteProfiles Biotinyl/lipoyl domain profile. 118 194 IPR000089 -
Ssu4g3188 490 Gene3D - 245 488 IPR023213 -
Ssu4g3188 490 SUPERFAMILY Single hybrid motif 117 212 IPR011053 -
Ssu4g3188 490 CDD lipoyl_domain 119 192 - -
Ssu4g3188 490 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 269 490 - -
Ssu4g3188 490 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 50 271 - -
Ssu4g3188 490 SUPERFAMILY CoA-dependent acyltransferases 268 490 - -
Ssu4g3188 490 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 50 271 - -
Ssu4g3188 490 MobiDBLite consensus disorder prediction 226 241 - -
Ssu4g3188 490 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 267 490 IPR001078 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3188 Ssu-Chr4 80677836 80684473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3188 1 490 Acyl Lipid Metabolism Gene Families AT1G54220 57.875 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3188 K00627 - gmx:100804938 791.571