Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3178 ATGAACAGCGCAATGGTACGTAATTTTCGCTCAAAAACCATAACCCGAAGTGATACTATATTTTTTGAGAAGGACAAAATTTTAAACCCAACAATTACACTGAACTACAAATCTGACTTGTTTACTTGCTCGTTATATATACCAGATCTTGAAGGAGAGACAATTAGGATGATGAACAATCAATCGTCTCATTCTGATGAGTCCATAAAATCCATTACCAACATTGACAGAGATAATGTTGTACCCAATTTTGATGAGACAGTTTGGATGATGAACAATCAAACGTCTCATTTTGATGAGTCCATACAATCCATTACCAATTTTGATGGAGATAATGTTGTACCCAATTTTGGTGAGACAATTAGGATGACGAACAATCAAACGTCTCATTCTGATGAGCCAATACAATCCATTACCAATTTTGATGCAACCCCAGAGAAAGGGTGGGGAAAATTCTTAAAACAAGCAGTGAACTTACTGGCACATCAGAATCAGAATGAGTGGTTGAAGGACATGAGAGGGAACCTAAGTTTGGTGGCTACGGTGATCTCAACTATGACCTTTCAAGTTGCTATTAATCCACCGGGTGGCGTTAGGCCCCCAAATGAAAACAGAGATGTTGAATGTCCAACAGTCCCTACATACACCGAATCATGTCCCGGAGAAGCTATCTTAGCTATTGTGTTCCCACATGATTATTACAAGTTTCTCGCATGGAACACCGTTTGTTTCGTGGCATCTCTCAGCGTTTGTCTCTTGCTTGTAAGTGGACTCCCTTTGGAACACCGACTAACCACGTGGCTTTTATCAATGGGCATGTGCATCACTATCACAAGCCTTGCTCTCACCTACATGTATGCCGCGTCAATGGTTACCCCACTTTCCGTTTGGGGCACAGCTTATGGTATGTTTGAAGTTGTTCTTCGTATTTGGGTTGCTTTGATAGGAATCATCGATCTTTTCCTCGTCATACGCTTATTTGTTGGGTATGTGAATTATTGGATTGAGAAAGGTAAGCCCCAAGAGATTGATTTTGATGTGCTATAA 1047 0.404 MNSAMVRNFRSKTITRSDTIFFEKDKILNPTITLNYKSDLFTCSLYIPDLEGETIRMMNNQSSHSDESIKSITNIDRDNVVPNFDETVWMMNNQTSHFDESIQSITNFDGDNVVPNFGETIRMTNNQTSHSDEPIQSITNFDATPEKGWGKFLKQAVNLLAHQNQNEWLKDMRGNLSLVATVISTMTFQVAINPPGGVRPPNENRDVECPTVPTYTESCPGEAILAIVFPHDYYKFLAWNTVCFVASLSVCLLLVSGLPLEHRLTTWLLSMGMCITITSLALTYMYAASMVTPLSVWGTAYGMFEVVLRIWVALIGIIDLFLVIRLFVGYVNYWIEKGKPQEIDFDVL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3178 348 PANTHER - 146 298 - -
Ssu4g3178 348 Pfam Domain of unknown function 167 288 IPR026961 -
Ssu4g3178 348 PANTHER CASKIN 146 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3178 Ssu-Chr4 80454214 80455260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3178 167 337 Miscellaneous Gene Families AT1G34050 27.011 2.45e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3178 - - aprc:113851037 232.261