Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3172 ATGAACGTTCAAATTGAATCCATAGAAGAGATGAAATGGTggacaaaagttataaaaagcgTAACGAAATGGTGGACAGAGGTGATAAAAAGTGTAAGGAATTGGCTGGAACTCGAAAAAAAGGATGAATGGTTGAAGGAGATGAGGGGGATGCTAAGTTTGGTGGCTACCGTAATCGCAACTATGACCTTTCAAAGTGCTATTAATCCACCAGGTGGAGTTAGGCCCGCAGATGAGAATGGATTTCTCAAATGTAACCAGACAGCTACGAATCCATGCCCCGGAGAAGCTGTCCTAGCTATTgttaaaaaagacatttatacGAGATTCCTTTATTGTAACACTATATGTTTCGTTTCATCTTCAGCTGTTTGTCTCTTGCTTGTAAGTGGACTCCCTCTGGATAACCGATTTATCACCTGGCTTTTCTCAATAGGCATGTGCATCACCCTCACTAGCCTCACTCTTACCTATTTGTTTGGTGCGCGACTGGTCACCCCGAATGACCTTTGGGATCCACTCATCTCCATGTTTGgactagttatttttatttggatgatACTGCTAGGACTCATCGCACTTTGTCTTTGCCTCAAGCTAATTGTTTGGATTGTGACTAAATATTGGAGACGTAAACGACGAGATTCAACTTAG 654 0.3899 MNVQIESIEEMKWWTKVIKSVTKWWTEVIKSVRNWLELEKKDEWLKEMRGMLSLVATVIATMTFQSAINPPGGVRPADENGFLKCNQTATNPCPGEAVLAIVKKDIYTRFLYCNTICFVSSSAVCLLLVSGLPLDNRFITWLFSIGMCITLTSLTLTYLFGARLVTPNDLWDPLISMFGLVIFIWMILLGLIALCLCLKLIVWIVTKYWRRKRRDST 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3172 217 Pfam Domain of unknown function 43 161 IPR026961 -
Ssu4g3172 217 PANTHER CASKIN 38 173 - -
Ssu4g3172 217 PANTHER - 38 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3172 Ssu-Chr4 80266993 80267646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3172 3 213 Miscellaneous Gene Families AT1G14480 23.697 5.87e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3172 - - gmx:100779783 241.891