Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3171 ATGAGTGGGTGtagaaaagttttgaaaaatgtaGGAAATTGGCTGGCACACAAAAATAAGGATGAATGGTTGAAGGACATGAGGGGGATGCTGAGTTTGGTGGCTACCGTAATCGCAACTATGACCTTTCAAAGTGCTCTTAATCCACCAGGTGGTGTTAGGCCCGCAAATGATAGAGATGAAGATGTCCAATGTCCACATAAGCTTTCAGATACGAATCCATGCCCCGGACAAGCTGTCCTAGCTGTTGTTTACCCAGATGATTATACCACATTCCTTTTATCAAACACTATATGTTTTGTTTCATCTTTAGCTGTTTGTCTCTTGCTTGTAAGTGGGCTCCCTCTGAATCACCGATTTTTCACCTGGCTTTTCTCAATAGGCATGTGCATCACCCTCACCGGCCTCACTCTTACCTACATGTTTGGTGCACAAATGGTTACCCCAGATCTCATTTGGAGTACAACCACCTCCATgtttaataaagttatttatatttggaTTTCACTGCTAGGACTCGTCACTTTTGTCCTTTGCCTACGCCTAATTGTTTGGATTGTGACTAAATGCATTGACAAATGTAAAGGAAGAGATCCAATCTAG 603 0.4046 MSGCRKVLKNVGNWLAHKNKDEWLKDMRGMLSLVATVIATMTFQSALNPPGGVRPANDRDEDVQCPHKLSDTNPCPGQAVLAVVYPDDYTTFLLSNTICFVSSLAVCLLLVSGLPLNHRFFTWLFSIGMCITLTGLTLTYMFGAQMVTPDLIWSTTTSMFNKVIYIWISLLGLVTFVLCLRLIVWIVTKCIDKCKGRDPI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3171 200 PANTHER CASKIN 18 155 - -
Ssu4g3171 200 Pfam Domain of unknown function 22 144 IPR026961 -
Ssu4g3171 200 PANTHER - 18 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3171 Ssu-Chr4 80242635 80243237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3171 28 160 Miscellaneous Gene Families AT1G14480 28.148 9.80e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3171 - - gmx:100815832 305.449