Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3162 ATGTCTTTGATTCGACGGAGAAAAGGGTCGGAACCGGAAAAGGATCCGAGCCCGAGTTCGGAACCGAAGGTTCAAAGcgaagaggaaaaagaagatgataagaataataagaagaagaaggtgaAGGTGAAGAAGAGCAAATGGTCGTGCATCGATAGTTGTTGCTGGTTTGTTGGGTGCATTTGCACGGTGTGGTGGTTTCTTCTGTTTTTGTATCAGATGATGCCTTCTTCGATTCCTCAGTATGTGACTGAGGCCCTCACTGGGCCCATGCCTGATCCACCGGGCCTCAAACTCAAGAAGGAAGGGCTCAAGGTGAAGCACCCTGTGGTTTTTGTGCCCGGGATTGTCACTGGAGGCCTTGAACTCTGGGAGGGTCATCAGTGTTCGGAAGGGTTGTTCAGGAAGCGCTTGTGGGGTGGTACCTTCGGAGAAGTCTATAAAAGACCATCATGCTGGGTGGAGCACATGTCACTGGACAATGAAACAGGATTGGATCCACCTGACATAAGAGTTAGGCCTGTCTCTGGACTTGTAGCTGCTGATTACTTTGCTGCAGGATACTTTGTATGGGCAGTCCTAATTGCTAACTTGGCACGCATTGGTTATGAAGAAAAAACTATGTACATGGCTGCATACGATTGGAGAATATCATTTCAGAACACTGAGGTGAGGGATCAAACACTAAGTCGGATAAAAAGCAACATAGAACTTATGGTTGCTACTAATGGTGGGAATAAGGCAGTTATTATTCCACATTCAATGGGTGTCTCGTACTTTCTTCATTTTATGAAGTGGGTTGAAGCACCAGCTCCAATGGGTGGTGGGGGAGGACCGGATTGGTGCTCCAAATATATAAAGGCAGTTGTAAACATTGGTGGACCATTTTTAGGTGTTCCCAAGGCTATAGCAGGGCTTTTCTCTGCTGAGGCCAGGGATATTGCTGTTGCCAGGACAATAGCTCCAGGATTTTTAGATAATGATCTGTTTCGCCTTCAAACCTTGCAACATGTAATGAAGATGACCCGTACTTGGGACTCAACAATGTCAATGATACCAAAAGGAGGAGATACTATATGGGGTGGTCTTGATTGGTCACCAGAGGAAGGCTATCACCCTAGCAAGAGAAAGCAAAGCAATAACAATACTCAGTTGACAGACCAAGAGACAAATCAAACAAATGTTGTCAACTATGGAAGAATTATTTCATTCGGCAGAGACGTGGCAGAGGCACCATCCTCTAAGATTGAGATGATTGACTTCCGGGGTGCCATCAAGGGTCGCAGTGTTGCAAATACCTCTTGTCGTGATGTGTGGACTGAATACCATGAAATGGGATATGAGGGAGTAAGAGCAGTTAAAGAACATAAAGTTTACACAGCTGACTCAATCATAGACCTGCTTCATTTCGTTGCTCCAAAGATGATGGCTCGTGGTAGTGCTCATTTCTCTTATGGAATTGCTGACAATTTGGATGACCCTAAATATAACCACTACAAATATTGGTCAAACCCCTTGGAAACAAAATTACCAAATGCTCCTGATACGGAAATCTTCTCTATGTATGGAGTTGGCTTACCAACTGAAAGAGCTTATGTTTACAAGTTAACTCCCTTGGCCGAGTGTTACATTCCTTTTGAGATTGACACTACACAGGATGGTGGTAGTGATGAAGATAGCTGTCTAAAGGGTGGAGTCTACACTGTTGATGGGGATGAGACTGTGCCGGTTCTAAGTTCAGGCTTCATGTGTGCTAAAGGTTGGCGCGGAAAAACAAGATTTAATCCTTCTGGTATTCGCACCTACATCAGAGAATATGATCATTCTCCACCGGCCAACCTGCTAGAGGGCCGGGGCACACAAAGTGGTGCTCATGTTGACATCATGGGAAACTTTGCATTGATTGAGGATGTTATAAGGGTGGCAGCTGGGGCCACAGGAGAAGATCTAGGGGGTGATAGGGTGTATTCTGATATCTTTAAATGGTCTGAGAAAATCAAGCTACCCTTGTGA 2013 0.4421 MSLIRRRKGSEPEKDPSPSSEPKVQSEEEKEDDKNNKKKKVKVKKSKWSCIDSCCWFVGCICTVWWFLLFLYQMMPSSIPQYVTEALTGPMPDPPGLKLKKEGLKVKHPVVFVPGIVTGGLELWEGHQCSEGLFRKRLWGGTFGEVYKRPSCWVEHMSLDNETGLDPPDIRVRPVSGLVAADYFAAGYFVWAVLIANLARIGYEEKTMYMAAYDWRISFQNTEVRDQTLSRIKSNIELMVATNGGNKAVIIPHSMGVSYFLHFMKWVEAPAPMGGGGGPDWCSKYIKAVVNIGGPFLGVPKAIAGLFSAEARDIAVARTIAPGFLDNDLFRLQTLQHVMKMTRTWDSTMSMIPKGGDTIWGGLDWSPEEGYHPSKRKQSNNNTQLTDQETNQTNVVNYGRIISFGRDVAEAPSSKIEMIDFRGAIKGRSVANTSCRDVWTEYHEMGYEGVRAVKEHKVYTADSIIDLLHFVAPKMMARGSAHFSYGIADNLDDPKYNHYKYWSNPLETKLPNAPDTEIFSMYGVGLPTERAYVYKLTPLAECYIPFEIDTTQDGGSDEDSCLKGGVYTVDGDETVPVLSSGFMCAKGWRGKTRFNPSGIRTYIREYDHSPPANLLEGRGTQSGAHVDIMGNFALIEDVIRVAAGATGEDLGGDRVYSDIFKWSEKIKLPL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3162 670 SUPERFAMILY alpha/beta-Hydrolases 98 498 IPR029058 -
Ssu4g3162 670 Gene3D alpha/beta hydrolase 146 337 IPR029058 -
Ssu4g3162 670 Pfam Lecithin:cholesterol acyltransferase 134 402 IPR003386 GO:0006629|GO:0008374
Ssu4g3162 670 Pfam Lecithin:cholesterol acyltransferase 460 630 IPR003386 GO:0006629|GO:0008374
Ssu4g3162 670 PANTHER PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1 22 670 - -
Ssu4g3162 670 MobiDBLite consensus disorder prediction 1 38 - -
Ssu4g3162 670 MobiDBLite consensus disorder prediction 370 389 - -
Ssu4g3162 670 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 22 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3162 Ssu-Chr4 80102454 80107592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3162 150 670 Acyl Lipid Metabolism Gene Families AT5G13640 77.055 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3162 K00679 - gmx:100812643 1241.87