Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3157 ATGAGTTTTCTATTCGGTAGTAGAAAGACTCCCGCTGAGCTTCTGAGGGAGAACAAAAGGATGCTGGACAAGTCCATTAGAGAAATAGAGAGGGAAAGACAAGGCTTGCAGAATCAAGAAAAGAAGTTGATTGTTGAGATTAAGAAGAACGCCAAACAAGGACAGAtgGGGTCAGTGAGAGTGATGGCCAAGGATCTTATCAGGACTCGCCATCAGATTGAAAAGTTTTACAAGCTCAAATCACAACTTCAGGGTGTTGCTTTGAGAATTCAGACACTAAAATCCACTCAAGCAATGGGGGAGGCTATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAATTTGCCTTCCTTACAGAGGATAATGCAAGACTTTGAAAGGCAGAATGAGAAGATGGAACTGGTGTCTGAGGTAATGGGAGACGCAATTGATGATGCTTTGGAAGGTGATGAAGAGGAGGAAGAGACAGAAGAGCTTGTCAATCAGGTTCTTGATGAGATCGGAGTCGACATCAACTCTGAGCTTTTGAATGCTCCTGCATCAACCTCTGTCAGTGCACCAGCGGCAAATAACAGGGTTGCTCAAGCTGAATCATCAGGCAATGAAGACAGTGGAATACATGATGATCTACAGACTAGGTTAGATAACCTGAGAAAAATGTGA 675 0.4296 MSFLFGSRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGSVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQRIMQDFERQNEKMELVSEVMGDAIDDALEGDEEEEETEELVNQVLDEIGVDINSELLNAPASTSVSAPAANNRVAQAESSGNEDSGIHDDLQTRLDNLRKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3157 224 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 224 IPR005024 GO:0007034
Ssu4g3157 224 Pfam Snf7 17 184 IPR005024 GO:0007034
Ssu4g3157 224 Coils Coil 12 46 - -
Ssu4g3157 224 Gene3D - 6 180 - -
Ssu4g3157 224 MobiDBLite consensus disorder prediction 185 215 - -
Ssu4g3157 224 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 224 - -
Ssu4g3157 224 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3157 Ssu-Chr4 80004759 80007178 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3157 K12191 - qsu:111998886 352.058