Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3152 ATGGGTTCTCGAGGAAGGCCATTATTTGATCTCAATGAGCCACCTGCAGAGGATAATGATGAGAGGGATGGTATTGTCTGCTTCCAGCCCCAAAAGACACACCCATCAACAAATCCCCATGCGTCTGACTTATTTGCAGCATCAACTGCTGCCCAAGGAATAGTAAATAATCATGCTTTTTCACATGCCTCATCTGTCTCTGGATTTCAACCTTTTGTTCGGCCTAAATCCACTGGTGTCCCTGAATTGGACTGTGAATTGAAGAGAGCAGGTGATCAAGATACGAAGGTTTCCTCTAAGTCAAGTAAAGATGAAGATATGAAAGTAATTGATTCACGGATACTAAGTTCAACAAATGCTCAATCTACGGAGAGGGAAGAAGGGGAATGGTCTGATGAGGAGGCCTTTGCTAATGCAAATGGAGGTAATAATGCTAATGCAAATGCAAATGTAGGTAATAATTTGCCACAACGAAGTCAAGCTTCGGAAGAGCCAGCAACATCTGGACTGGTGGATGGGGGTGTTGCAGTAGCTTCTGACAGTAAGTCTAGAAATATTAAGAGTTCTGATAGTATAAATGATGAAAAGAGTAGCCATACTTCTATAGGTCTAGAAACAAATTCTACTGAACAGAAAAGCAATAGTATTCCAAATTCAGAAAGCAGTATAAAAAGTGAAGCTTCTATTGATGCACAGGAGGAACCCACTTTAATTCCCAAGCAAAAAGAAGTAAAAGGTATTGAAGCAAGTCATGCACTTAGGTGTGCAAATAATCCTGGCAAGAGGAAGATTGACCAACGTAAAGAGGAAATGTTGGGAAAGAAACGTAATAGACAGACTATGTTTCTTAACTTGGAAGATGTCAAGCAAGCAGGTCCTATTAAAACATCAACCCCTAGAAGACAGACTTTCTCATCACCTGTCATAAGTCGTACCATAAAGGAAGTCCGCTCTGTTCCTGCACAAGTTGAGCGTGTTGGAATGGCCAAGGATCAGAAGCTCATCGACACATCTTCCGGTGAAGGTGGCAACCATGCTGAAGCACATGAACCTAAATCTGATTGTAATGGTGATACTTCCGGAGCACTTGTTAGATCTAGGAGGCTAAACAGTGAGACGGAACCTCATACAGAGGCCAATTTACCACCCTTTCCAAGACAGGGTTCATGGAAACAACTGACAGATTCGAGGCAGCAGAAGAATGTACTCCATTCTAATAGGAAGTTGGGATTGAGTGGTCAAAGCTCCAATGATGTCAAATTGGGAAACAAGAAACATCTTTCTATCAAGAAGCAGACTCCTATCAGCAGCCAGTCCCAGGACACATCTGTTGAACGCCTTATACGGGAGGTGACCAGTGAAAAGTTTTGGCATCACCCAGAGGAGACTGAGCTACAGTGTGTTCCGGGTCGGTTTGAATCAGTGGAAGAGTATGTTAGAGTATTTGAGCCTTTGCTTTTCGAGGAATGTCGTGCTCAACTTTACAGTACCTGGGAAGAATCAACAGAAACAGTGTCAAGGGATACTCATATTATGGTGCGAGTGAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGATGTGAAAGTCCTTCCAGTACATGAGTTCAAGTGGTCATTTAAGGAGGGCGATGTTGCAATCCTTTCATCCCCTAGGCCTGGATCAGTTAGATCCAAGCAGAACAGTTCATCTTTATCTCAGGATGATGGGGAATCAGAAATCACTGGACATGTGGTCGGTACAGTTAGGCGTCACATACCTATTGATACCCGTGATCCTCCTGGTGCAATTCTACATTACTATGTTGGAGACTCTTATGATTCCAACAGGGTTGATGATGATCATATCATAAGAAAACTTCAAAGTGGAAGCATCTGGTATCTCACAGTGCTTGGTTCTCTTGCTACCACACAGAGGGAGTATATTGCCCTACATGCATTTCGTCGCTTAAATTTGCAGaTGCAAACTGCAATCCTTCAGCCTAGTCCTGAACACTTCCCTAAATATGAGCAACAGACCCCAGCAATGCCTGAATGCTTCACACAGAACTTTGTTGAGTATCTGCGTCGGACCTTCAATGAACCCCAGTTGGCAGCAATCCAGTGGGCAGCTATGCATACAGCTGCTGGTACAAGTAGTGGAACAACAAAGAGGCAAGAACCTTGGCCATTTACCCTTGTTCAAGGACCTCCAGGAACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCACCTTGTGCAGTATCAGCACTACTACACATCTTTACTTAAGCATGTAGCCCCTGAGAGCTACAAGCAAGTCAATGAGATCAATTCAGAGAATGCCCCCACTGGGTCTATTGATGAAGTTCTTCAAAATATGGACCAGAATCTTCTACGAACTTTACCTAAACTGGTCCCAAAACCTAGAATGTTAGTTTGTGCTCCGTCTAATGCTGCCACCGATGAGCTTCTTGCCCGTGTTCTTGATCGTGGATTTATTGATGGAGAGATGAAAGTATATCGACCTGATGTAGCTCGAGTTGGGGTTGATTCTCAGACACGTGCTGCCCAAGCAGTTTCTGTTGAGCGTAGAACTGAACAGCTTCTTGTCAAGAGTCGGGAAGAAGTTATGGGATGGATGCACCAGTTAAAGAATCGTGAGGCGCAGTTGACTCAACAGTTACATTGTCTTCATAGAGAACTGaatgctgctgctgctgctgttcGTTCCCAAGGATCTGTTGGTGTTGATCCTGACCTTCTCATCGCCCGAGATCAGAATAGAGATGCTTTGCTACAGAATCTTGCTGCTGTGGTTGAAAACAGGGACAAGGTTCTGGTTGAGATGTCTCGCCTTGCCCTTTTGGAAAGTAGGTTCCGTCCTGGTAGTGGTTTTAATTTGGAAGAAGCCCGTGCTAGTTTGGAGGCCAGTTTTGCAAACGAAGCGGAGATAGTTTTCACTACAGTTTCTAGCAGTGGTCGCAAGTTGTTTTCTCGTCTTTCCCATGGTTTTGATATGGTGGTGATAGATGAGGCAGCCCAAGCTAGTGAGGTGGCAGTTCTGCCTCCCCTCTCTCTTGGTGCAGCACGGTGTGTTCTTGTTGGAGATCCTCAGCAGCTTCCTGCTACAGTTATAAGCAAGGCTGCTGGAACATTGATGTATAGTAGGAGTCTTTTTGAAAGGTTCCAACAAGCAGGATGCCCGACAATGTTATTGTCTGTGCAGTATAGAATGCATCCCCAAATTCGGGATTTCCCTTCTAGGTACTTCTATCAGGGGCGCCTTACTGATAGTGAAAGTGTGGCTAAATTGCCTGATGAGCCATACTACAAGGACCCTTTACTTAGACCTTATTTATTCTATGATATCAGACATGGGCGTGAGTCTCACAGAGGTGGATCAGTCTCTTACCAAAATATGCATGAAGCACAATTTTGTCTCAGATTGTATGAGCATGTTCAGAAAACATTGAAGTCTTTGGGTGTAGGAAAGATTACTGTTGGTATAATTACTCCTTATAAGCTGCAGTTGAAATGCCTCCAACGTGAGTTTGAGGAAGTCTTAAATTCAGAAGAAGGGAAGGATCTATATATCAATACAGTAGATGCCTTCCAAGGTCAAGAACGTGATGTCATTATAATGTCTTGTGTGCGTGCATCCAGTCACGGGGTTGGCTTTGTTGCAGATATACGTCGAATGAATGTTGCCCTTACGCGTGCAAGAAGGGCCCTTTGGGTCATGGGAAATGCGAATGCTCTGGTGCAATCTGAAGATTGGGCTGCATTGATTAATGATGCAAAATCTCGAAATTGCTATATGGACATGGACTCTCTTCCCAAGGACTTCCTGGTGTCCAAGGGATCTGTTGGCACATCATTGCCTGGTAAGCCTTCTTCGAATATGAGGGGCATGAGATCAGGTGGACCAAGATATAGATCAATGGACATGCATATGGAGTCCAGGTTGGGAGCACCATCTGAAGATGATGACAGTATGGGTGCTCCAGTTAGCTCCAGAAATGGGAACCATCGTCCATCACGGTATTCAATGGAGAATTCCTTAGATGATTTTGATCACGGGGGCGACAAATCCAGAGACACCTGGCAGTATGGTATACAGAAGAAGCAGAACTCAACCGGAACCATGGGAAAGAGAGATGTATAA 4155 0.4387 MGSRGRPLFDLNEPPAEDNDERDGIVCFQPQKTHPSTNPHASDLFAASTAAQGIVNNHAFSHASSVSGFQPFVRPKSTGVPELDCELKRAGDQDTKVSSKSSKDEDMKVIDSRILSSTNAQSTEREEGEWSDEEAFANANGGNNANANANVGNNLPQRSQASEEPATSGLVDGGVAVASDSKSRNIKSSDSINDEKSSHTSIGLETNSTEQKSNSIPNSESSIKSEASIDAQEEPTLIPKQKEVKGIEASHALRCANNPGKRKIDQRKEEMLGKKRNRQTMFLNLEDVKQAGPIKTSTPRRQTFSSPVISRTIKEVRSVPAQVERVGMAKDQKLIDTSSGEGGNHAEAHEPKSDCNGDTSGALVRSRRLNSETEPHTEANLPPFPRQGSWKQLTDSRQQKNVLHSNRKLGLSGQSSNDVKLGNKKHLSIKKQTPISSQSQDTSVERLIREVTSEKFWHHPEETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPVHEFKWSFKEGDVAILSSPRPGSVRSKQNSSSLSQDDGESEITGHVVGTVRRHIPIDTRDPPGAILHYYVGDSYDSNRVDDDHIIRKLQSGSIWYLTVLGSLATTQREYIALHAFRRLNLQMQTAILQPSPEHFPKYEQQTPAMPECFTQNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSGTTKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKQVNEINSENAPTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSREEVMGWMHQLKNREAQLTQQLHCLHRELNAAAAAVRSQGSVGVDPDLLIARDQNRDALLQNLAAVVENRDKVLVEMSRLALLESRFRPGSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVAKLPDEPYYKDPLLRPYLFYDIRHGRESHRGGSVSYQNMHEAQFCLRLYEHVQKTLKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSEDWAALINDAKSRNCYMDMDSLPKDFLVSKGSVGTSLPGKPSSNMRGMRSGGPRYRSMDMHMESRLGAPSEDDDSMGAPVSSRNGNHRPSRYSMENSLDDFDHGGDKSRDTWQYGIQKKQNSTGTMGKRDV 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 87 240 - -
Ssu4g3152 1384 Pfam AAA domain 1051 1247 IPR041679 -
Ssu4g3152 1384 Gene3D - 624 1072 IPR027417 -
Ssu4g3152 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1275 IPR027417 -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 137 166 - -
Ssu4g3152 1384 PANTHER DNA2/NAM7 HELICASE FAMILY 1 1337 IPR045055 -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 1346 1366 - -
Ssu4g3152 1384 Pfam AAA domain 698 1044 IPR041677 GO:0004386
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 195 229 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 1330 1345 - -
Ssu4g3152 1384 CDD DEXXQc_SETX 692 1074 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 1309 1323 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g3152 1384 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 1337 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 87 111 - -
Ssu4g3152 1384 Gene3D - 1073 1279 IPR027417 -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 1286 1384 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 551 573 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 387 422 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 324 422 - -
Ssu4g3152 1384 MobiDBLite consensus disorder prediction 553 571 - -
Ssu4g3152 1384 CDD SF1_C_Upf1 1075 1264 IPR041679 -
Ssu4g3152 1384 Coils Coil 877 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3152 Ssu-Chr4 79876935 79883188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3152 - K10706 gmx:100794516 2585.83