Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3150 ATGGCGGAAACGGCATCACCCTCCTCCAAACCCCCAAGCATGGACCCTCAAAACCCCGGAGCCTCATCCAACCCTACCATCCCCTCCCCCTCCCCGCAAAACATGGCCTCCCCCTCCCTCCCTCCGCTCCCCCAACAAGACCAACAACAGCTCCACCAACAGCTCAGtccccaacaacaacaacaacaacaaccccTGGTCTCGTCGCAAGCCAtgaacaacagcaacaacaacatgaACCCTATCTCCAATTTCCAACTCCAGCAGACGCTCCAGCGGTCCCCTTCCATTTCGCGCCTCAATCAAATTCAGCCCCAGCAGCCGCAGCAGCAGCAACAGCAGTTCGGCATCATGCGCCAGCAGGCCGGACTGTACGGCGGTCAGATGAGCTTCGCCGCCGCAGGCGCCGCCGCCGCGCAGCAGCAGCAGTTGGGCGCCTCGAGTTTGTCGCGGTCCGCGCTCATAGGGCAGACCGGGCACTTCCCCATGCTGTCCGGTGCCGGAACGCAGTTTAACTTGCTGTCCTCGCCAAGGCAGAAAGGTGGGCTAGTCCAGCCGTCTCAATTCTCTTCAGGTAATTCTGCTGGACAATCACTGCAAGGAATGCAAGCAATGGGGATGATGGGGTCACCAAATCTCAGCTCACAACTACGAACCAATGGAGCCATGGGCATGTATGCACAGCAGCTGCGTATGAGTCAGGGTCAAATCAGGCAGCAACTATCACAGCAGAGTTCGCTTAACACTGCACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAATTCTCAGTTGTCTGGGTTGTCTCAGAATGGACAACCTGCGATGATTCATAACTCTTTAACACAGCAACAGTGGCTTAAGCAAATGCCAGCAATGTCTGGCCCTGGCTCACCAATGCGTCTTCAACATCAGAGGCAGCAGCAACTGGCTTCTTCTACTCAATTGCAACAAAACTCTATGACCCTGAACCAACAACAATTGACCCAGCTGATGCAGCAACAGAAATCGATGGGACAGCCTCAGCTGcatcagcagcagcagcaacagCAGCAGCCACCTCAACAGCTGCAACAACAACAGCTTATGCAACAGCAGCCACAACAACAATCTCAGATACAAGCTTCTGTCCATCAACAGCAACAGCAGCAGTCTCCAAGGATGCCAGGACCTGCAGGCCAAAAGTCACTTAGTCTAACAGGATCACAGCCAGATGCTACTGCATCTGGTGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAACAACAAACCAAGTCCTTGGGAAGAGAAAGATACAGGATTTAGTCGCTCAGGTGGATCCACAGGGTAGGCTGGACCCCGAAGTTATAGATCTTCTTTTAGAGCTCGCTGATGACTTCATTGATTCTACAACTACACATGGTTGCATTTTGGCAAAACATAGAAAATCGTCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACAATTCCTGGATATTCAAGTGAAGACAAGAAGTATCAGAGCAAACCTCAATTAAATGACCTCCACAAGAGGCGCCTAGATATGATTCGCACTTTGATGGAATCCTCGCCCTCTGAGTCGAGTATTAACAGTTCTAAAGAGATGGGTAAACAGGGTCTTCCTAATCCTAATGCTGTGGGTGCCCACCACCTAGTAAGACCCTTGAGTTCAGAGCAGTTGGTTTCTCATTCAGCTGGTTCTCAAATGTTACAGCAGATGACAAGGTTTCAATGA 1773 0.4884 MAETASPSSKPPSMDPQNPGASSNPTIPSPSPQNMASPSLPPLPQQDQQQLHQQLSPQQQQQQQPLVSSQAMNNSNNNMNPISNFQLQQTLQRSPSISRLNQIQPQQPQQQQQQFGIMRQQAGLYGGQMSFAAAGAAAAQQQQLGASSLSRSALIGQTGHFPMLSGAGTQFNLLSSPRQKGGLVQPSQFSSGNSAGQSLQGMQAMGMMGSPNLSSQLRTNGAMGMYAQQLRMSQGQIRQQLSQQSSLNTAQVQGLPRSSSLAFMNSQLSGLSQNGQPAMIHNSLTQQQWLKQMPAMSGPGSPMRLQHQRQQQLASSTQLQQNSMTLNQQQLTQLMQQQKSMGQPQLHQQQQQQQQPPQQLQQQQLMQQQPQQQSQIQASVHQQQQQQSPRMPGPAGQKSLSLTGSQPDATASGATTPGGSSSQGTETTNQVLGKRKIQDLVAQVDPQGRLDPEVIDLLLELADDFIDSTTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEDKKYQSKPQLNDLHKRRLDMIRTLMESSPSESSINSSKEMGKQGLPNPNAVGAHHLVRPLSSEQLVSHSAGSQMLQQMTRFQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3150 590 SUPERFAMILY Histone-fold 430 501 IPR009072 GO:0046982
Ssu4g3150 590 MobiDBLite consensus disorder prediction 293 319 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 534 560 - -
Ssu4g3150 590 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 353 588 - -
Ssu4g3150 590 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 6 364 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 334 431 - -
Ssu4g3150 590 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 353 588 IPR037794 GO:0000124|GO:0005669|GO:0046695
Ssu4g3150 590 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 6 364 IPR037794 GO:0000124|GO:0005669|GO:0046695
Ssu4g3150 590 MobiDBLite consensus disorder prediction 23 39 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 1 82 - -
Ssu4g3150 590 Gene3D Histone, subunit A 427 502 IPR009072 GO:0046982
Ssu4g3150 590 MobiDBLite consensus disorder prediction 40 82 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 534 551 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 179 198 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 94 115 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 303 319 - -
Ssu4g3150 590 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g3150 590 CDD TAF12 432 500 IPR003228 GO:0005669|GO:0006352
Ssu4g3150 590 Pfam Transcription initiation factor TFIID subunit A 433 500 IPR003228 GO:0005669|GO:0006352
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3150 Ssu-Chr4 79821537 79829448 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3150 K03126 - gmx:100783017 717.613