Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3131 ATGTTATGGTCTGAGGTACATGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATCCGGACCAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCTTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCACTCAAGCCCCCATGCAAGTTTCCTTCCCATGCTGATGATTGCCCATATTCTTATAAGCCTGATTGTGGTCAGGATGGGCCTGTGTTCGTTATCATGATTGAGAATGATAAGATGTCTGTACAAGAATTTAGTGCAAACTCAACAGTATTGGATTTGTTGGAAAGAGCTGGGCGAGCAAGCTCTAGGTTAACAACATATAGGTTCCCACTGAAGGAAGAGTTGAGGCCAAGGCTGAATCATAAGCCTGTAAGTGACCCCAATAGCAAGTTGAAGATGGGAGATATGGTTGAACTTACACCAGCCATACCTGACAAGTCTCTTACAGAGTATAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACTGTATCAAGCAAGGGAACTGCTGCAAGCACCATGGTTGGCTCAAGAAGTTGA 723 0.4398 MLWSEVHGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSLKPPCKFPSHADDCPYSYKPDCGQDGPVFVIMIENDKMSVQEFSANSTVLDLLERAGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDMVELTPAIPDKSLTEYREEIQRMYDRGLTVSSKGTAASTMVGSRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3131 240 PANTHER - 2 240 - -
Ssu4g3131 240 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 2 240 - -
Ssu4g3131 240 Gene3D Beta Polymerase, domain 2 1 44 IPR043519 -
Ssu4g3131 240 SUPERFAMILY Nucleotidyltransferase 2 84 IPR043519 -
Ssu4g3131 240 ProSiteProfiles S4 RNA-binding domain profile. 178 214 - -
Ssu4g3131 240 SMART RelA_SpoT_2 1 64 IPR007685 GO:0015969
Ssu4g3131 240 CDD NT_Rel-Spo_like 2 52 IPR007685 GO:0015969
Ssu4g3131 240 Pfam Region found in RelA / SpoT proteins 3 63 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3131 Ssu-Chr4 79415562 79416953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3131 2 61 EF-hand Containing Proteins AT3G17470 46.875 6.80e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3131 K00951 - gmx:100787301 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3131 4 79415562 79416953 Ssu4g3131 4 79415562 79416953 ECH