Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3125 ATGGCCCTTACAAAACAGATTATGGGTTCTTCGTTGCTAGAGAGGTCCTTCTTTGTTCCTTCTACCCCTTCATCTCTTCTGAACCAAACTCGGTTCTTAGTTCCTTTGGAGAGCAAGGGAGGGGTGAGGGTGAGGAAGGGTGCAAAGTTTCCCGTGGCAGCTATAAGTGAGGATTTGTTGAagggttcttcttcttcttcatcctcatcctcttcttcttcttctgtgtCTATAGAAAAACCAGTGAAATTCAAGGTTAGAGCTGTGATCACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACCATAGTGAAGCATATTGATGCTCTAACTGACAGGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGTAATGAAGCAGTGCTGAAGGATTGGTTTAAGAAGTCCAATGTTAAGGCAGAGAGGGTTAATTACACAGCAGAATTCATAGTTGACTCGAGTTTTGGGGTGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACCATTGAAGGATTTGCTAGTGGACCAGTTCATTTCCCCTGCAACTCATGGGTACAAGCCAGAAAAGATCATCCTGGAAAGAGGATTTTCTTTTCCAACAAGCCTTATTTACCCGGCGATACACCTGCTGGGCTTAGATTGTTGAGGGAGAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTTAGAAACTTGTCTGACAGAATATATGACTATGATATATACAATGATTTGGGAAATCCAGACAAAGGAATTGAACTTGCCAGACCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACTGGCCGTGAACCAAGCGATACAGATATGTACGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGAGATGAACATTTTGAGGAGTCTAAGCAGAACACATTCTCTGTGAAGAGGCTGAAGGCTGTGCTGCATAACTTGATCCCGGGTCTTAAGGCTAGCCTTTCTGCTAGCAACCAAGACTTCAATGAATTCTCAGACGTTGATGGCCTTTACAGTGAAGGGCTGCTCATAAAGTTGGGGTTGCAAGATGACGTGTTGAAGAAAATCCCATTTGTCAGCAAGATCCAAGAGTCCAGCCAGGGACTTCTTAAGTTTGACACTCCTAAGATTATTTCAAAGGACAAATTTTCCTGGCTGCGAGATGACGAATTTGCCCGCCAAGCAATAGCAGGAGTTAACCCCGTTAACATAGAGAGCCTTAAAGTTTTCCCACCAGTTAGCATACTAGACCCCGAAATTTATGGTCCCCCAGAGTCTGCTCTTAAAGAAGAACACATATTAAGTCAACTTAATGGCATGACTGTCCAAGAGGCAATAAGCGAAAATAAGCTGTTTATCATAGATTATCATGATATCTATCTTCCCTTCCTAGAAGGGATCAATGCCCTCGATGGTAGGAAATCATATGCCACGCGCACCATCTTTTTCTTGACACCCCGTGGCACTCTCAAGCCTGTGGCAATAGAACTTAGCCTGCCTCCTGCTGGACCTAGTTCTCGATCAAAGCGCGTGGTTACACCTCCTGTTGATGCAACTACTAATTGGATGTGGCAGCTTGCCAAGGTCCATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCATTGGTTACGCACACATGCCTGCATGGAACCATTTATATTGGCGGCTCATAGGCAATTAAGTGCTATGCATCCAATTTACAAGTTATTGGACCCCCACATGAGGTACACCTTGGAGATCAATGCCTTGGCTCGACAGAGTTTGATCAATGCTGATGGAGTCATTGAAAATTGTTTCACTCCTGGTCGCTACGCCATGGAGATTAGTTCTGCTGCTTACAAAAACTTTTGGCGCTTTGACATGGATAGCCTCCCTGAAGATCTCATCCGCAGGGGAATGGCAGTACCTGACCCAACACAACCACATGGTCTAAAGCTCATATTGGAAGACTACCCCTATGCAGCTGATGGATTACTAATCTGGTCTGCCATAGAAGACTGGATTCGTACCTATGTGAACCATTACTACCCTCATTCAAGCCTGATATGCAATGACAAAGAGCTACAAGCTTGGTACTCCGAGTCAGTCAATGTGGGCCATGCTGATCTTAGGCATGAAAGCTGGTGGCCCACATTGAACAATAGTGAGGATCTTGTCTCCATCCTTTCCATATTGATTTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGTCAGTACCCTTATGGTGGCTATGTGCCTAATCGGCCCCCACTAATGCGAAGGTTAATACCGGAAGAGAGTGATCCAGAATATGCAAGTTTCCTTGCTGACCCGCAAAAGTATTTTCTGAATGCATTGCCTAGCTTGTTGCAAGCCACAAAGTTTATGGCTGTGGTTGACACACTCTCTACTCACTCACCTGATGAGGAGTACTTGGGGGAGAGGCAACAACCTTCGATTTGGTCTGGTGATGCTGAGATCATTGAGGCGTTCTATGATTTCTCTGCAAAGATTAGACAGATTGAGAAGGTGATTGATAGCAGGAACCTTGATCGGACTCTTAGGAACCGTTGTGGTGCAGGGGTGTTGCCTTATGAGTTACTTGCTCCTAGCTCTGAACCTGGTGTTACATGCAGAGGGGTACCCAATAGTGTGTCGACATAA 2757 0.4418 MALTKQIMGSSLLERSFFVPSTPSSLLNQTRFLVPLESKGGVRVRKGAKFPVAAISEDLLKGSSSSSSSSSSSSSVSIEKPVKFKVRAVITVRNKIKEDFKETIVKHIDALTDRIGRNVVLELVSTEIDPKTKAAKKSNEAVLKDWFKKSNVKAERVNYTAEFIVDSSFGVPGAITVTNKHQKEFFLESITIEGFASGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIELARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDEHFEESKQNTFSVKRLKAVLHNLIPGLKASLSASNQDFNEFSDVDGLYSEGLLIKLGLQDDVLKKIPFVSKIQESSQGLLKFDTPKIISKDKFSWLRDDEFARQAIAGVNPVNIESLKVFPPVSILDPEIYGPPESALKEEHILSQLNGMTVQEAISENKLFIIDYHDIYLPFLEGINALDGRKSYATRTIFFLTPRGTLKPVAIELSLPPAGPSSRSKRVVTPPVDATTNWMWQLAKVHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQSLINADGVIENCFTPGRYAMEISSAAYKNFWRFDMDSLPEDLIRRGMAVPDPTQPHGLKLILEDYPYAADGLLIWSAIEDWIRTYVNHYYPHSSLICNDKELQAWYSESVNVGHADLRHESWWPTLNNSEDLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYASFLADPQKYFLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIIEAFYDFSAKIRQIEKVIDSRNLDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3125 918 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 225 918 IPR013819 GO:0016702|GO:0046872
Ssu4g3125 918 Pfam Lipoxygenase 235 901 IPR013819 GO:0016702|GO:0046872
Ssu4g3125 918 Gene3D - 551 917 - -
Ssu4g3125 918 PANTHER LIPOXYGENASE 29 917 IPR000907 GO:0016702|GO:0046872
Ssu4g3125 918 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 84 226 IPR036392 GO:0005515
Ssu4g3125 918 Gene3D - 416 549 - -
Ssu4g3125 918 Pfam PLAT/LH2 domain 143 221 IPR001024 GO:0005515
Ssu4g3125 918 ProSitePatterns Lipoxygenases iron-binding region signature 1. 572 586 IPR020833 GO:0016702|GO:0046872
Ssu4g3125 918 SMART LH2_4 84 223 IPR001024 GO:0005515
Ssu4g3125 918 Gene3D - 330 415 IPR027433 -
Ssu4g3125 918 CDD PLAT_LH2 84 223 IPR042057 -
Ssu4g3125 918 Gene3D - 227 329 - -
Ssu4g3125 918 ProSitePatterns Lipoxygenases iron-binding region signature 2. 599 609 IPR020834 GO:0016702|GO:0046872
Ssu4g3125 918 ProSiteProfiles PLAT domain profile. 100 222 IPR001024 GO:0005515
Ssu4g3125 918 PRINTS Lipoxygenase signature 554 571 IPR013819 GO:0016702|GO:0046872
Ssu4g3125 918 PRINTS Lipoxygenase signature 572 589 IPR013819 GO:0016702|GO:0046872
Ssu4g3125 918 PRINTS Lipoxygenase signature 592 612 IPR013819 GO:0016702|GO:0046872
Ssu4g3125 918 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 29 917 - -
Ssu4g3125 918 SUPERFAMILY Lipoxigenase 228 917 IPR036226 -
Ssu4g3125 918 Gene3D PLAT/LH2 domain 71 226 - -
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 830 844 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 403 419 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 509 533 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 257 273 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 290 309 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 442 461 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 218 239 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 358 379 IPR001246 GO:0016491
Ssu4g3125 918 PRINTS Plant lipoxygenase signature 192 210 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3125 Ssu-Chr4 79255014 79261041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3125 1 917 Acyl Lipid Metabolism Gene Families AT1G17420 72.000 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3125 K00454 - gmx:100793614 1732.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3125 4 79255014 79261041 Ssu4g3125 4 79255014 79261041 ECH