Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3118 ATGTTTAAACTGGTCTGTTCATTTGTCATGCAGATTTTGAAACCtgcttttacaataatagttgATCACGAGATGAGATGCTTTTTGTTATTGATTCGTGGCACACATAGTATCAAGGATACTCTAACGGCTGTTACAGGAAGTGTGGTACCATTTCATCACACTGTTGTTCATCAGGGGGGTGTCAGTGATTTGGTTTTAGGTTATGCACATTGTGGAATGGTTGCTGCTGCTCGATGGATTGCAAAGCTTGCAACTCCTTGTCTCCTTGAAGCACTTGGCCACTACCCTGACTATAAAGTTAAGATTGTAGGGCACTCTTTGGGTGGAGGCACTGCAGCAATTCTAACATATGtgttgagagagagaaaggaactGTCCGTCACTACATGTGTTACATTTGCTCCAGCTGCTTGTATGACATGGGAGTTGGCAGAGTCAGGCGATAGTTTTATTACTTCTATTATAAATGGAGCTGATTTGGTGCCTACATTCTCAGCTGCTTCTGTAGATGACTTGCGTTCTGAGGTGACAGCATCAGCATGGATAAATGACTTGAGGAATCAAATTGAGCAAACAAGAATACTTAGTACTGTCTATCGTTCGGCATCAGCATTAGGTTCTCGTCTCCCATCAATTGCTACTGCTAGAGCAAAAGTTGCTGGGGCTGGGGCCATGTTACAGCCAGTTTCTAATGGTACCCAGGTTGTGATGAAGAGGGCCAAGAGTATGGCTCAGGCTGCATGGACGCGTCCAAACCTTAATTTGTCCTCTTGGTCATGCATGGGGCCCCGTCGCAGAGCCTTGAGTGCTCATTCAAATTCCAAAGACGGGGGAAGTTCCCCTACATCTTCTGCCTCTACCGACGTTGAAAGTTCCAATCCACTTCTTGGTTCTCCCACAAAAGCAATTAATGCAAAGAACATGAACCTTCCTGTATCTTCATCTATAGAAGAGTGGTCTTCTGAGATTGAATGTGGCAATGGAAGTAGTCCTGATGCTGAGATGGATGTTGATCATGATGACGTTGAGAACATGATGGACCATGACAGATATGAGGATCAGATGAGTGAAGTGGAGTTGTGGCAACAACTGGAGCATGAGCTGTATGACGGACCTGAAGGTGAGGAGGCTGATGTTGTAAAGGAGATAAGGGAAGAGGAAGCAGCCATAGCAGAGGAAGTAGGGCAAACCCAGAGCTCTGCACCAGAAATCAAAGAAGTCCACAGATTTTTCCCTCCGGGAAAGATAATGCACATTGTTACACTCCACTATGACGCTGCTGAGCATGAAAATGATGGTAGCCCAACCTCTGTAAGTTCAGACAATAGCCAGCCAAATGAGACGAAGATTGGGATTTTTCTAACTTCAAGGTCTCTATATAGTAAACTTAGACTTTCACAGAGAATGATCAGTGATCACTTCATGCCAGTTTATAGAAGGCAAATTGAAAGGCTAATAAAAGAACTTGAGGAAGAATCTACTGAGGATCATAGAACACAAGATATAGTGTTATAG 1518 0.4282 MFKLVCSFVMQILKPAFTIIVDHEMRCFLLLIRGTHSIKDTLTAVTGSVVPFHHTVVHQGGVSDLVLGYAHCGMVAAARWIAKLATPCLLEALGHYPDYKVKIVGHSLGGGTAAILTYVLRERKELSVTTCVTFAPAACMTWELAESGDSFITSIINGADLVPTFSAASVDDLRSEVTASAWINDLRNQIEQTRILSTVYRSASALGSRLPSIATARAKVAGAGAMLQPVSNGTQVVMKRAKSMAQAAWTRPNLNLSSWSCMGPRRRALSAHSNSKDGGSSPTSSASTDVESSNPLLGSPTKAINAKNMNLPVSSSIEEWSSEIECGNGSSPDAEMDVDHDDVENMMDHDRYEDQMSEVELWQQLEHELYDGPEGEEADVVKEIREEEAAIAEEVGQTQSSAPEIKEVHRFFPPGKIMHIVTLHYDAAEHENDGSPTSVSSDNSQPNETKIGIFLTSRSLYSKLRLSQRMISDHFMPVYRRQIERLIKELEEESTEDHRTQDIVL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3118 505 Pfam Lipase (class 3) 30 167 IPR002921 GO:0006629
Ssu4g3118 505 CDD Lipase_3 21 166 - -
Ssu4g3118 505 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 11 492 - -
Ssu4g3118 505 Coils Coil 476 496 - -
Ssu4g3118 505 MobiDBLite consensus disorder prediction 273 303 - -
Ssu4g3118 505 Gene3D alpha/beta hydrolase 1 203 IPR029058 -
Ssu4g3118 505 MobiDBLite consensus disorder prediction 267 303 - -
Ssu4g3118 505 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 11 492 - -
Ssu4g3118 505 SUPERFAMILY alpha/beta-Hydrolases 2 167 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3118 Ssu-Chr4 79133443 79136313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3118 12 493 Acyl Lipid Metabolism Gene Families AT3G14075 61.507 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3118 - - gmx:100807086 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3118 4 79133443 79136313 Ssu4g3118 4 79133443 79136313 ECH