Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3116 ATGATACCCCCTTTTGTTGGATTCACCAGAATACTTGTGCTTCTTGTTTTCGTCTCTGCTTGCTGTTGCAGTTCTTCTACAAACGGAAGTATGAAAATGGAGAAAACTTTAGCGATTATAAAACCAGACGGATTGCTTGGTAACTACACAGATGATATCAAGAGAACAATTGTAGACTATGGTTTCAGAATTTTTAAGGAACAGATTGTTCAACTTGATGAGGCCactatgaaaagtttttatgcTGAACACTCTTCAAAAAGCTTCTTTTCCAGCCTTATAAAATACATGACAAGTGGACCAGTGTTAGTTATGGTCTTGGAGAAGGAAAATGCTATTGCTGATTGGCGTGCTTTAATGGGCCCTACTGATGCAAGCAATGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGTGGATTCGATATGGAAAAGAATTGTGTTCATGGTTCAGACTCTCCCAAATCTGCACAAAGAGagatatcatttttctttagggAGCTCTCTGCAgATGTGGTTGCAGAGCATGATGAATTGTAG 543 0.3665 MIPPFVGFTRILVLLVFVSACCCSSSTNGSMKMEKTLAIIKPDGLLGNYTDDIKRTIVDYGFRIFKEQIVQLDEATMKSFYAEHSSKSFFSSLIKYMTSGPVLVMVLEKENAIADWRALMGPTDASNAKITHPHSIRAKCGFDMEKNCVHGSDSPKSAQREISFFFRELSADVVAEHDEL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3116 180 Gene3D - 32 177 IPR036850 -
Ssu4g3116 180 PRINTS Nucleoside diphosphate kinase signature 80 99 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu4g3116 180 PRINTS Nucleoside diphosphate kinase signature 100 117 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu4g3116 180 PRINTS Nucleoside diphosphate kinase signature 36 58 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu4g3116 180 PRINTS Nucleoside diphosphate kinase signature 147 166 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu4g3116 180 SUPERFAMILY Nucleoside diphosphate kinase, NDK 31 169 IPR036850 -
Ssu4g3116 180 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 19 179 - -
Ssu4g3116 180 ProSitePatterns Nucleoside diphosphate kinases active site. 147 155 IPR023005 -
Ssu4g3116 180 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 19 179 - -
Ssu4g3116 180 SMART ndk_5 33 173 IPR034907 -
Ssu4g3116 180 Pfam Nucleoside diphosphate kinase 34 168 IPR034907 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3116 K20790 - gmx:100500470 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3116 4 79089130 79091605 Ssu4g3116 4 79089130 79091605 ECH