Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3114 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTCTCTACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGGACGCTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAACTGGACATGGAGAGGGAGGAACTTCCCCAACATATGACACGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCTTCAGATCTGAAAGGGACTATGaggaaaagaatggaattcCTTGACTTGGACTAG 387 0.4367 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDMEREELPQHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDLD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3114 128 CDD LSm1 12 82 IPR034104 GO:0000956
Ssu4g3114 128 PANTHER LSM1 1 127 IPR044642 -
Ssu4g3114 128 SMART Sm3 13 81 IPR001163 -
Ssu4g3114 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 1 127 - -
Ssu4g3114 128 Gene3D - 12 125 - -
Ssu4g3114 128 SUPERFAMILY Sm-like ribonucleoproteins 13 89 IPR010920 -
Ssu4g3114 128 Pfam LSM domain 14 80 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3114 Ssu-Chr4 79062487 79065308 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3114 K12620 - gmx:100306352 249.595