Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3090 ATGAGCAGAGTTGGTGATTCTTTGAACGTGGATTTGGCTGCTGCAGTGAACAACCTTTTCAATCTTCCTGAAACCATGGAAAAGTTCATGTTTCCTTCTTCTCGTGCTCATGACCACCATGAGACCGGAGGGGTTTCTACCATTCCAGTGGACATTTTGGACACTGCCAAGGAGTATATATTCTTTATGGATGTTCCTGGTCTCTCCAAGTCTGAAATTCAGGTGACGGTTGAAGACGAGAATACACTCGTTATACGAAGCAATGGGAAAAGGAAACGTCAAAATGGAGAGGATGAAGGGTGCAAGTATCTTAGGCTGGAGAGGAGAGGACCTCAGAATTTGTTGAGGAAGTTCCGTTTACCTGAGAATGCCAATGTGTCAGCCATCACAGCTAAATGCGAGAATGGGGTTCTGACTGTGGTGGTTGGGAAGCACCCTCCTCCAAAATCTAAAACTGTTGAAGTTGCCATTGCTTGA 477 0.4528 MSRVGDSLNVDLAAAVNNLFNLPETMEKFMFPSSRAHDHHETGGVSTIPVDILDTAKEYIFFMDVPGLSKSEIQVTVEDENTLVIRSNGKRKRQNGEDEGCKYLRLERRGPQNLLRKFRLPENANVSAITAKCENGVLTVVVGKHPPPKSKTVEVAIA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3090 158 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Ssu4g3090 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 158 IPR002068 -
Ssu4g3090 158 PANTHER 17.4 KDA CLASS III HEAT SHOCK PROTEIN 13 158 - -
Ssu4g3090 158 CDD ACD_sHsps-like 51 144 - -
Ssu4g3090 158 Gene3D - 10 157 IPR008978 -
Ssu4g3090 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 158 - -
Ssu4g3090 158 SUPERFAMILY HSP20-like chaperones 30 157 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3090 Ssu-Chr4 78721143 78721789 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3090 K13993 - gmx:100803161 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3090 4 78721143 78721789 Ssu4g3090 4 78721143 78721789 ECH