Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3087 ATGGATTCAACAAAGGAGAAGAAGCTGCAGAGCAGTGTTGCTGTTGCAGATGGAGCTGACACCAAGTCTTACTTTATGCAGAAGTTCAGGCTCTATGAAACTCGCTcgAAATTTTATATGATCGGAAGAGACAAAAACAGAACATTTTGGAGGGTCTTAAAGATTGACAGATTGGAGCCATCTGAATTGATTATCGTTGAAGATTCAACAGGATACTCAGAAATTGAGTGTTGTGACCTTCTGAGGCGGATACATGAAGGAAACAAGTCAACAGGGGGGCTTAAATTTGTAACAACTTGCTATGGAATCATCGgATTTATCAAATTTCTTGAGCCATATTACATGCTGCTTATAACAAAGCGAAGGAAGATCGGCACAATCTGTGGGCACACTATATATGCTATCACAAAGAGCGAAATGGTTCCAATTCCACATGCTACTCTGCAACCCAAAATGGCTTATTCTAAGGATGAGAACAGATACAAGAAGCTTCTATGCAGTGTGGATCTTACAAAGGACTTCTTTTTCAGCTACTCCTACAATGTCATGCTTAGTCTTCAAAGGAACTTATCTGATCATAATACTACAGGACAATCACTTTATGAAACCCTTTTTGTTTGGAATGAGTTCTTAACTCGTGGAATCAGGAATACTCTCCAGAATACTTCATGGACTGTAGCCTTAGTGTATGGCTTTTTTAAACAGGTCAAACTTTCTATATCTGACAGTGAGTTCAACTTGACTATCATTGCTAGGCGCTCACGGCATTATGCTGGGACCAGGTATTTGAAACGAGGAGTGAATGAAAAAGGTAGAGTAGCTAATGATGTTGAGACAGAGCAGATAGTCTTCACAGATGCTCGTGATGGACGCCCAATGCAAATCAGTTCTGTGGTGCAGATCCGGGGTTCAATCCCTCTGTTCTGGTCTCAGGAAGCCTCTAGATTGAATATAAAACCTGACATTATATTATCAAGGAAGGACTCTAATTTTGAAGCCACAAGActtcattttgaaaatcttgtCAAGAGATATGGAAATCCAATTATTATACTGAACTTGATAAAGACACGTGAGAAGAAGCCTCGAGAAACTATTCTGCGAGCCGAGTTTGCGAATGCTGTCAggtctattaataaaaatttgacagGGGAAAATCGCCTGAGGTTCCTTCATTGGGATCTGCATCGACATTCAAGATGCAGCAAAGCTACTAATGTGTTGGGACAACTGGGAAAAGTGGCTGCATATGCGCTGAAGCTGACTGGCATCTTCTACTGTTCGGTGACACCAAATGGGAGGCTAGATGGATTATCCCAATATTCCTACTCTGAGGATAACAATGTCATTGATCACTGCATCACAGAACAAGCTAGTATAAACAAGGATAATGTTGATAAAGAAACAGAAATTAGCAACTGTTACTGTAGTGGTGGTGAGGAGAAAGATAACAGTGTCAAACCCCTGATGCTTCAATCCGGGGTCTTGAGGACTAATTGCATAGACTGTTTAGATCGTACCAATGTTGCTCAATATGCTTATGGACTGGCTGCACTTGGATGTCAGCTACAAGTTTTAGGATTTATTGAATCCCCCTATATTGATCTTGATAACCCTTTGGCCAAGGAATTAATGCAAGTCTATGAATCCATGGGTGACACATTAGCCTTTCAATATGGGGGATCTGCAGCACACAACAAGATATTTTCCGAGAGAAGAGGCCAATGGAAGGCAGCAACACAATCCCAGGAATTTATTCGAACCCTACAGCGTTATTACAACAATACATATTTAGATGGTGATAAGCAAAAAGCAATTAACTTATTCTTGGGGCATTTTCAGCCACAGCAGGGAAAACCAGCACTGTGGGAGCTAGATTCAGATCAACATTACACTCTTGGGAAACATGGCCTGTATTTAGCAGATGACACCGTTAGGTCAACTATGAAAAGATCGCTATCAGATGGTAACATTCTCAGTGAAAGTGACACTACAATTAGCAACTTGAATGTTACAAATTGTCAGCACTCATCTGAAAAACCTGATAAGCGTTTCCTTTCTGGGTCTACTCCAGACATCTTTActtgtaaaagtgatatttgtCATTGCAGGCAGATGTATGGAGAAATGGTCAAGGGCCAAAACTGTGACAgtgatcatatttattatgatgAACATGGAGATGCATGTGACTGCTCCAATTTCCTTGATGTGGACTGGCTTTCTACTTCTGGAAATTCTTGTGAAGAGGAATTACTTGAAAGGTCAACCAGCATCTCCTCGGAGAATATTGCGAATGAACTAGTAACTGAGACATCTGCAAGTGAATCTGGATCCAGCATTAAGGGAAGGCAGAGTGGAGAAGAACTCAGTAAAGATGGCAAATACAGTGAAAGCTTTGAGCGGTGGGTAACTCAAGGGGAGATGCTTTTTGTTTGA 2439 0.3977 MDSTKEKKLQSSVAVADGADTKSYFMQKFRLYETRSKFYMIGRDKNRTFWRVLKIDRLEPSELIIVEDSTGYSEIECCDLLRRIHEGNKSTGGLKFVTTCYGIIGFIKFLEPYYMLLITKRRKIGTICGHTIYAITKSEMVPIPHATLQPKMAYSKDENRYKKLLCSVDLTKDFFFSYSYNVMLSLQRNLSDHNTTGQSLYETLFVWNEFLTRGIRNTLQNTSWTVALVYGFFKQVKLSISDSEFNLTIIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIVFTDARDGRPMQISSVVQIRGSIPLFWSQEASRLNIKPDIILSRKDSNFEATRLHFENLVKRYGNPIIILNLIKTREKKPRETILRAEFANAVRSINKNLTGENRLRFLHWDLHRHSRCSKATNVLGQLGKVAAYALKLTGIFYCSVTPNGRLDGLSQYSYSEDNNVIDHCITEQASINKDNVDKETEISNCYCSGGEEKDNSVKPLMLQSGVLRTNCIDCLDRTNVAQYAYGLAALGCQLQVLGFIESPYIDLDNPLAKELMQVYESMGDTLAFQYGGSAAHNKIFSERRGQWKAATQSQEFIRTLQRYYNNTYLDGDKQKAINLFLGHFQPQQGKPALWELDSDQHYTLGKHGLYLADDTVRSTMKRSLSDGNILSESDTTISNLNVTNCQHSSEKPDKRFLSGSTPDIFTCKSDICHCRQMYGEMVKGQNCDSDHIYYDEHGDACDCSNFLDVDWLSTSGNSCEEELLERSTSISSENIANELVTETSASESGSSIKGRQSGEELSKDGKYSESFERWVTQGEMLFV 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3087 812 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 6 812 IPR043573 GO:0043813|GO:0046856
Ssu4g3087 812 ProSiteProfiles Sac phosphatase domain profile. 165 561 IPR002013 GO:0016791
Ssu4g3087 812 MobiDBLite consensus disorder prediction 769 785 - -
Ssu4g3087 812 MobiDBLite consensus disorder prediction 769 796 - -
Ssu4g3087 812 Pfam SacI homology domain 101 399 IPR002013 GO:0016791
Ssu4g3087 812 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC4 6 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3087 Ssu-Chr4 78690884 78703749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3087 26 810 Acyl Lipid Metabolism Gene Families AT5G20840 57.598 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3087 K22913 - gmx:100806380 1472.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3087 4 78690884 78703749 Ssu4g3087 4 78690884 78703749 ECH