Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3068 ATGTGCAAACTAGATTGTCTGTCAATGGATGCACTGGACAAGGCTTTTTCTGAGCTAGTCAGCATCGTGAAATCATGGATTCCCTGGCGATCTGAGCCAGCAAATGTGTCTAGGGATTTTTGGATGCCTGACCAGAGTTGTAGAGTATGCTACGATTGTGATTCCCAGTTCAACTTATTAAACCGTAAACACCACTGTCGTCTTTGTGGACGAATTTTCTGTAACAAGTGCACAACAAACTCGGTTCCTGCTCCATTTAGCAACCAAAGGAATTCTTGGGATGAGTTGGAAAAGATTCGTGTATGTAATTATTGTTACAAGCAATGGGAGCAGGGCGTAGTTGCTTTAGATAACAGTATTCCAGTTTCCAATCTGGATCCTAGTGCTTCACCATCAACTTCAAGTTTGGCTAGCAGTAAAACCAGTGCCACTGCAAACAGTAGTAATATTACTGTTTGCTCCATGCCTTATTCAGTTGGGTCTTATCAACAAATGCAACAGGGTTCTGTTCTGAACCTGCATCAATCACCTGTGAGGGGAAAAGACACCGATACTAATAGGGAAGGTTTATCAGAATTAGGAGGGAGGAGTGATCTTGTAGCAGACCTGGGTGATCCATTACCGAAGCAATATGGATTCTCAATAAACAGgagtgatgatgatgaggatgagtATGGTGTATATCGGTCAAATTCTGATATGAGGCATTATCCTCAAGTCAATAGTTACTATGGACAAGCTGAGGTTAATGGGATAGGCAACACTGATGGCTCACAGAAAGTGGATCCTGATGGAGAAAACATTAATGCAAACCTCCCTTCAAGCTACAGTTTTGACACACAGGGTTTGGAAGGAGCCCCAGTTATTGcaaaaaatgaagatgaaccTGATATCTGTGATGAAAATGAAGCTCCTTCCTCATTATATGTTTCAGAGGATGTTGATGCTGAAcctgttgattttgaaaataatggacTTCTCTGGCTCCCTCCAGAACCAGAAGATGAAGAATATGAACAGGAAGCTATTttgtttgatgatgatgatgataatgacgGGAATGCCATTGGGGAGTGGGGGTATCTGCGCAGTTCAAGCAGTTTTGGAAGTGGCGAGTATCGACACAGAGATAGGTCAAACGAGGAGCACAAGAAGGTAATGAAGAATGTAGTTGATGGGCATTTTAGGGCATTGGTATCTCAGCTGTTACAGGTTGAGAATCTACCTGTTGAAGACAATGACAAAAACAGTTGGTTGGAGATTGTCACGGCTCTGTCATGGGAAGCTGCTACTTTATTGAAACCAGATATGAGCAAAGGTGGAGGGATGGACCCAGCTGGTTATGTGAAAGTCAAATGCATAGCATGTGGGAGCCGCACTGAAAGTGTGGTGGTTAAAGGAGTTGTTTGCAAGAAAAATGTGGCTCACCGGCGAATGACATCAAAAGTGGATAAACCTCGCCTGTTGATCCTTGGAGGGGCTCTAGAGTATCAACGTGTTTCCAACCTCTTATCTAGTGTAGATACCCTATTACAGCAGGAAATGGACCATCTGAAGATGGCAGTGGCAAAGATAGCTTCACACCAGCCAAACATATTGTTGGTAGAGAAATCAGTCTCGCGATACGCACAGGAATATCTTCTTGAAAAAGACATATCCCTGGTTCTCAATGTCAAGAGACCACTTTTGGAGCGTGTAGCACGTTGCACAGGCACTCAAATAGTGCCTTCAGTCGATCGTCTTTTATCACCAAAGTTGGGTTACTGTGAAACATTTCATGTTGAAAAGTTTCTGGAAGACCTAAATAGTGCTGGTCAGGgtgggaaaaaaatgaaaacattgaTGTTTTTTGAAGGTTGCCCAAAACCATTGGGTTTCACAATTTTACTTAGAGGTGCTGACAAAGATGAATTGAAGAAGGTAAAGCATGTGGTTCAGTATGGAGTTTTTGCAGCTTACCATTTAGCTTTGGAGACATCTTTTCTTGCTGATGAAGGAGTCTCCCTGCCAGAAATTCCATTAAACAGTCTGGCCCTTCCAGATAAATCATCATCCATTCAGAGGTCCATTTCAACAGTTCCTGGTTTCAGTGTTGCTGGTAATGAAAAGCCTCAAGGGCATGAACCTGACACTGAACCACGGATAACCAGTAGTGTCACAATTGCCGATCTAGCCTTGTCAACCTGCAGTACAGGGCCCTGTATGTCTAATGATGCTTCTCAATCTATGCCACTTGGATCAAGTCTCAACCATTCAACTGCCTTTTACTCCTCCGTCGTTGCTTCAGGAAATTCAATTCCAGAATCGCACCAGAATAAGCTTCTTTCTTGCACTAGTAGGGACAGAAATGAAATGGACTCCAAACAACCTCTAGTGGAAGAAACTTCTATGGTGGACAACACACTTGTTGTCATGGATGATCCTACTGTAGATGACCCTGGAACTTCAGAGAAATTATATCAAAGCATGTCAGCTGACACTCCACAAAATGATGATAGCAAAATCTCTACAAACCAGTTAAGTGGGTCAGGATCTTTATCTCCAAAAGATATTCAAAACCATCCCGAGAATCTTGGAATTCCAAATGAAGAACCAGTTCCCGTAAAAGAAGAATTTCCTCCATCGCCCTCTGACCATCAAAGCATTTTGGTGTCTTTGTCCTCCCGGTGCGTATGGAAGGGAACTGTGTGTGAGAGGTCCCATCTCTTTCGAATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGGTTTCTGCGGGACCATTTATTTGATCAGAGTTATCGATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGCTATACTCATCGACAGGGAACACTTACCATATCCGTCAAGAAACTACCTGAAATTATCCTACCTGGTGAAAAGGATGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCGAGAATCAATGGCTTTCCTCCTGCTACACACAGAATAATAATGTCTGATGCTGCTTGGGGTTTATCATTTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCTTTACACAGAGATTGTCTTCGTTTTTATGGATTTGGAAGAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCAGTCTACCTTCCCCCACATGAACTGATATTCGATTATGGGAATCAGGATTGGATACAACAAGAATCAGATGAGGTGGTCAACCGGGCAGAGCTTTTATTCTCTGATGTACTCAATGGTCTTAGTCAAATTGGAGAGAAAAGATCTAGTGCAGCCCAAATCAGCAATGGCCTTAAAACAACTGAAATAAGACGTCAAGTTGTTGAACTAGAGGGGATGTTGCAAAAGGAGAAACTAGAATTTGAGGAAACTCTTCAAAAGATTTTgaaacaagaaaagagaaatggcCAGCCTGGGATTGACATTCTGGAAATTAATCGATTGTGGAGGCAGTTACTTTTTCAATCATATATGTGGGATCACCGCCTTATTTATGCCACCAACATAGTCAATTCCAACAATGAATCTGGTTCAGTCAGTCCTATTTCAGAGGATAAGGAGAAACCTATAGATGAAAATCAGATGAGCATGGTCTCCATGACAGGAAGGGGATTCAGTAGTGTTAACTCTATTCATGGTGATGCAAAGCATAATGAAAGCCCAAGCCTTGGAGGAGGAAGTGTAGTAGTTGATGGCAAAATTTCACAAGATGATGCATTGCATCAAGAAATTGACAtggccaaaaataaaaatcacgaGAAAGATGACAAACCTAATCTTTATAACTGCAAAAGCATAAATGATCAATCTGACCTTTTAGAACCCGAATTGGGTGTTCGCAGAGCTCTTTCTGATGGGCCATTTCCTGTCATACCTAGTTTGTCTGAAACACTTGATGCAAAATGGACTGGTGAAAACCACTCAGGATTTGGAAGTCAAAAGGATACAACTTCTGTAAATCCCGATGTACTTATGGCAGATGCTTTGATGACCACTGTacaaaaagaaacatataatcTAGGGGATCGTACAGAAGATCAAAATGGTTCCAAGAGTTTCTATTCTTCTTCTAAAGGTCATGATAATATGGAAGACTCTTCAAGCTGGTTAGGAATGCCCTTCTTGAACTTCTATCGCCAATTTAACAAGAATCTTTTTGCTAGTACACAGAAGCTTGATACCCTAGTTGACTACAATCCTGTTTATGTGTCATCTTTCCGGACGCAGGAACTCCAGGGTGGGGCAAGGCTGCTTCTGCCAATTGGTGTCAATGACACTGTAATTCCAGTATATGATGATGAACCCTCAAGTATTATAGCTTATGCCTTAATGTCACCAGAATATCATTTCCAATTGACTGATGAAGGAGAAAGGCCGAGAGAAGGAAATGAGTTGGGTTCATCATATTTTTCTGACTCAGGCACCTTCCAGTCATTCTCATCTATTGACGAAACAGCTTTTGATTCTCAGAAAAGTTTTGGATCAATAGAGGAAATGATATTTTCCATGTCTGGGTCTCGTAATTCATTAATGTTGGACCCCATGCTATATACTAAGGCTATGCATGCCAGAGTTTCCTTTGGAGAAGATGGTCCCCTTGGCAAGGTAAAATATTCGGTAACTTGTTACTATGCCAAACGTTTTGAAGCCTTAAGAAGGGTCTGTTGTCCTTCAGAGCTCGACTATATTAGGTCTCTGAGTCGCTGTAAGAAATGGGGAGCTCAAGGTGGGAAGAGTAATGTATTCTTTGCAAAAACTTTGGATGATCGATTTATCATCAAACAAGTTACCAAAACAGAGCTTGAATCATTCATTAAATTTGGTCCTGAATACTTCAAGTACCTTTCTGAGTCCATAGGCACCGGAAGTCCAACATGCCTGGCAAAGATTCTTGGCATATACCAGGTTACATCAAAGCATCTTAAAGGAGGGAAAGAATCAAGGATGGATGTTTTGGTTATGGAGAATCTTCTGTTTAGGAGGACTGTGACACGACTTTATGACCTTAAGGGATCTTCCAGGTCTCGGTATAATGCAGATTGTAGCGGGAAAAATAAAGTTCTGCTGGACCAGAACTTAATTGAAGCAATGCCAACTTGTCCTATTTTCGTGGGAAACAAAGCGAAACGATTGTTGGAGAGAGCTGTCTGGAATGACACTGGTTTTCTTGCTTCAGTTGATGTAATGGACTATTCTTTACTGGTTGGGGTGGATGAAGAGAAGCATGAGTTGGTTATCGGAATCATTGATTTCATGAGGCAGTATACCTGGGACAAGCATCTTGAAACATGGGTAAAAGCTTCAGGCATCCTTGGAGGACCAAAGAACACACCTCCAACAGTTATATCACCCAAGCAATACAAGAAGAGGTTCAGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAGTGGTCTCCCCCTTCTATCATTCCTAGTCATTCTCAGTCTGATTTAGGTGAAGACAGCACACATTCTAGGACTCCAGCTGAATGA 5538 0.4077 MCKLDCLSMDALDKAFSELVSIVKSWIPWRSEPANVSRDFWMPDQSCRVCYDCDSQFNLLNRKHHCRLCGRIFCNKCTTNSVPAPFSNQRNSWDELEKIRVCNYCYKQWEQGVVALDNSIPVSNLDPSASPSTSSLASSKTSATANSSNITVCSMPYSVGSYQQMQQGSVLNLHQSPVRGKDTDTNREGLSELGGRSDLVADLGDPLPKQYGFSINRSDDDEDEYGVYRSNSDMRHYPQVNSYYGQAEVNGIGNTDGSQKVDPDGENINANLPSSYSFDTQGLEGAPVIAKNEDEPDICDENEAPSSLYVSEDVDAEPVDFENNGLLWLPPEPEDEEYEQEAILFDDDDDNDGNAIGEWGYLRSSSSFGSGEYRHRDRSNEEHKKVMKNVVDGHFRALVSQLLQVENLPVEDNDKNSWLEIVTALSWEAATLLKPDMSKGGGMDPAGYVKVKCIACGSRTESVVVKGVVCKKNVAHRRMTSKVDKPRLLILGGALEYQRVSNLLSSVDTLLQQEMDHLKMAVAKIASHQPNILLVEKSVSRYAQEYLLEKDISLVLNVKRPLLERVARCTGTQIVPSVDRLLSPKLGYCETFHVEKFLEDLNSAGQGGKKMKTLMFFEGCPKPLGFTILLRGADKDELKKVKHVVQYGVFAAYHLALETSFLADEGVSLPEIPLNSLALPDKSSSIQRSISTVPGFSVAGNEKPQGHEPDTEPRITSSVTIADLALSTCSTGPCMSNDASQSMPLGSSLNHSTAFYSSVVASGNSIPESHQNKLLSCTSRDRNEMDSKQPLVEETSMVDNTLVVMDDPTVDDPGTSEKLYQSMSADTPQNDDSKISTNQLSGSGSLSPKDIQNHPENLGIPNEEPVPVKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQSYRCHSCEMPSEAHVHCYTHRQGTLTISVKKLPEIILPGEKDGKIWMWHRCLRCPRINGFPPATHRIIMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASIDVHSVYLPPHELIFDYGNQDWIQQESDEVVNRAELLFSDVLNGLSQIGEKRSSAAQISNGLKTTEIRRQVVELEGMLQKEKLEFEETLQKILKQEKRNGQPGIDILEINRLWRQLLFQSYMWDHRLIYATNIVNSNNESGSVSPISEDKEKPIDENQMSMVSMTGRGFSSVNSIHGDAKHNESPSLGGGSVVVDGKISQDDALHQEIDMAKNKNHEKDDKPNLYNCKSINDQSDLLEPELGVRRALSDGPFPVIPSLSETLDAKWTGENHSGFGSQKDTTSVNPDVLMADALMTTVQKETYNLGDRTEDQNGSKSFYSSSKGHDNMEDSSSWLGMPFLNFYRQFNKNLFASTQKLDTLVDYNPVYVSSFRTQELQGGARLLLPIGVNDTVIPVYDDEPSSIIAYALMSPEYHFQLTDEGERPREGNELGSSYFSDSGTFQSFSSIDETAFDSQKSFGSIEEMIFSMSGSRNSLMLDPMLYTKAMHARVSFGEDGPLGKVKYSVTCYYAKRFEALRRVCCPSELDYIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPEYFKYLSESIGTGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLFRRTVTRLYDLKGSSRSRYNADCSGKNKVLLDQNLIEAMPTCPIFVGNKAKRLLERAVWNDTGFLASVDVMDYSLLVGVDEEKHELVIGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSIIPSHSQSDLGEDSTHSRTPAE 1845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3068 1845 Gene3D GroEL 460 632 IPR027409 -
Ssu4g3068 1845 SUPERFAMILY GroEL apical domain-like 461 632 IPR027409 -
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 1825 1845 - -
Ssu4g3068 1845 SUPERFAMILY SAICAR synthase-like 1544 1812 - -
Ssu4g3068 1845 Gene3D - 1671 1813 - -
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 248 277 - -
Ssu4g3068 1845 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 44 110 IPR017455 -
Ssu4g3068 1845 SMART fyve_4 36 111 IPR000306 GO:0046872
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 815 852 - -
Ssu4g3068 1845 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 9 1835 - -
Ssu4g3068 1845 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1498 1669 IPR027484 -
Ssu4g3068 1845 Coils Coil 1127 1147 - -
Ssu4g3068 1845 CDD PIPKc_PIKfyve 1549 1812 IPR044769 GO:0000285
Ssu4g3068 1845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 117 IPR013083 -
Ssu4g3068 1845 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1588 1754 IPR002498 GO:0016307|GO:0046488
Ssu4g3068 1845 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1B 9 1835 - -
Ssu4g3068 1845 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1488 1812 IPR002498 GO:0016307|GO:0046488
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 807 875 - -
Ssu4g3068 1845 Pfam FYVE zinc finger 41 109 IPR000306 GO:0046872
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 1351 1373 - -
Ssu4g3068 1845 SUPERFAMILY FYVE/PHD zinc finger 39 110 IPR011011 -
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 175 202 - -
Ssu4g3068 1845 SMART PIPK_2 1522 1813 IPR002498 GO:0016307|GO:0046488
Ssu4g3068 1845 MobiDBLite consensus disorder prediction 694 715 - -
Ssu4g3068 1845 Pfam TCP-1/cpn60 chaperonin family 415 654 IPR002423 GO:0005524
Ssu4g3068 1845 CDD Fab1_TCP 396 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3068 Ssu-Chr4 78220668 78229600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3068 10 1845 EF-hand Containing Proteins AT3G14270 60.161 0.0 2090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3068 K00921 - gmx:100819364 3301.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3068 4 78220668 78229600 Ssu4g3068 4 78220668 78229600 ECH