Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3066 ATGGACCTCCCTAGCCACAAGTTCTTTCAACCTCCATCTGCATTGGCACCACATGGGGAAGCACTCACTGAGAGCAACATGAGCCTGTACGGGAAAGGCAAAGACAACCCTTTTGCAGATGCCTTCCCTGACCCACTTTGCAAGCTCAACCTGAAGGAAACCTCTGAGTTTGTCAAGTCATTTCCAATGCCAAATGCTGAAAGCAGAGGCCACTCTGTTTCACAACAGAGGAGAACACTAGAGGCTCCCTCCACACCTGGGAGACCCCTTTTCAGCTTCAGCTCTGGCCTTCCAAGAAAGAGCTTCCCTTCCAAGTGGGATGATGCGGAGAAATGGCTCATGAGCACTTCTTGTCATGACTCACCTGCTCACAACAACAACACTGTGAAGGTCTCAGACTCCTCAAAGATCACAACCAGACAACAATGTGATGATGGCTTCAAGCACCAAATAATGGAGGATTTCTCGGAGAAATCGAGGGTCACAGAAGAAAGGGTGTCCAAAGCTGTCTCAACCTTCCACTGGTCTTCATCTTTGGACCACCACCATAACACACTCGGCGCTTTCCATGGTGCTGCAGACATTGTACTAAAAGATAAGTTCACAGACAGCATAGAGCCTGTTTTACCAAATTTGAGATATTCAGAGCCGGCTAAGGAAGGGTTCTTGTTTAAGAACCAAGGTGGTGAGGCAATGCAAGATGCTTGCACAGAAGTGGTTCAACATAGGGATGTTGGGACGGAGATGACTCCTCTGGGAAGTTCCACAACTTCAAGATGCCACACCCCAGTTAAGATTTCATCACCTCCCCGCCATAACACTCCTGCAAGTAGGTCAGGGCCATTGGCCTTGGCTAGCACTGCCTGCACTCTTGATGTTATTCAGCTTGAGGAGTGCCATTTTTCTAAGCTGCAACTAGGAACACAGTATGATATAGTCACTTCAAATTGGAGCTCAagtgaagaggaagaaaaggaaatatCAAAAAGCTTGAGGCACAATGCTAGCCACAAAGCTGACTCAGACTGCATAGCTGCTGCATgggaagaagaggagaagacCAAGTGTTGTCTTAGGTACCAGAGAGAAGAAGCAAAAATCCTAGCTTGGGTAAACCTCCAAAGTGCTAAAGCAGAAGCCCGGTCAAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAACCTGGAAGaaaagttgatgaagaggatgtcAGTAGTTCACAGGAAAGCTGAGGAGTGGAGAGCAGAAGCTAGACAACAACACTTGGAGCAAATCCAGAAGGCCACTGAACAAGCTCAAAGGATGATTCATAAACATAACTCACAATTTTCAAAGCCCAGTTCATGCGGTTGCTTCCCTTGCAATAACAACCATCATTAA 1383 0.4476 MDLPSHKFFQPPSALAPHGEALTESNMSLYGKGKDNPFADAFPDPLCKLNLKETSEFVKSFPMPNAESRGHSVSQQRRTLEAPSTPGRPLFSFSSGLPRKSFPSKWDDAEKWLMSTSCHDSPAHNNNTVKVSDSSKITTRQQCDDGFKHQIMEDFSEKSRVTEERVSKAVSTFHWSSSLDHHHNTLGAFHGAADIVLKDKFTDSIEPVLPNLRYSEPAKEGFLFKNQGGEAMQDACTEVVQHRDVGTEMTPLGSSTTSRCHTPVKISSPPRHNTPASRSGPLALASTACTLDVIQLEECHFSKLQLGTQYDIVTSNWSSSEEEEKEISKSLRHNASHKADSDCIAAAWEEEEKTKCCLRYQREEAKILAWVNLQSAKAEARSRKLEVKIQKMRSNLEEKLMKRMSVVHRKAEEWRAEARQQHLEQIQKATEQAQRMIHKHNSQFSKPSSCGCFPCNNNHH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3066 460 PANTHER OS11G0616300 PROTEIN 1 456 - -
Ssu4g3066 460 Coils Coil 419 443 - -
Ssu4g3066 460 Pfam Remorin, C-terminal region 345 441 IPR005516 -
Ssu4g3066 460 PANTHER OS02G0116800 PROTEIN 1 456 - -
Ssu4g3066 460 MobiDBLite consensus disorder prediction 248 279 - -
Ssu4g3066 460 MobiDBLite consensus disorder prediction 67 82 - -
Ssu4g3066 460 MobiDBLite consensus disorder prediction 62 98 - -
Ssu4g3066 460 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3066 Ssu-Chr4 78194419 78198528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3066 - - gmx:100819894 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3066 4 78194419 78198528 Ssu4g3066 4 78194419 78198528 ECH