Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3065 ATGCGGAAATCCGCTGCAGACAGGTTCAGGCACCTTTCCACCCGTTCACTCCTTCTGCTTCGGCACCACCATCATATTCGCCGtccctttccttcttcttcttcttcttcttctctctccccATTTTCTCGCTCTCGTTTCTTGTCTTCTACTCCGTTTTCCATGGCTTCTGATTCCCCTTTCCCTGTTACCGTTCACAACATCAACCCCAAGGTTCTGAAATGTGAGTATGCTGTTAGAGGAGAGGTTGTCACACTTGCCCAGAATTTGCAAACGGAATTACAGGCCAATCCAGGTTCTCGTCCATTTGATgagGTACTTTACTGCAACATTGGAAATCCTCAGTCTCTTGGCCAGCCTCCAATAACTTTTTTCCGAGAGGTTCTTGCTTTATGTGACTATCCAGCTATTTTGGACAGAAGTGAAACACAGGGTTTGTTCAGCGCTGATGCCATAGAGCGAGCTTGGCAGATTGTGGATCAGATTCCTGGGAGAGCAACTGGTGCTTATAGCCATAGTCAGGGTATCAAGGGCTTGCGCGATACAATAGCTGCTGGAATTGAAGAGCGTGATGGTTTTCCTGCCAATCCCGATGACATTTTTATGACAGATGGTGCAAGCCCTGCAGTCCATAATATGATGCAGTTACTCATTAGATTGAAAAATGATGGTATTCTGTGTCCCATTCCACAGTACCCTCTGTACTCAGCCTCAATTGCCCTCCATGGTGGCTGCCTGGTACCTTATTATCTGGATGAAGCAACAGGTTGGGGGTTGGAAATATCTGAACTCAAGAAGCAATTGGAGGCTGCCAAGTCTAAGGGCATCAGTGTTAGGGCTTTAGTTGTTATAAATCCTGGCAATCCAACAGGGCAGGTTCTTTCTGAGGAAAATCAGCGGGATATAGTAGAATTTTGCAAGCAAGAAGGTTTGGTTCTTTTAGCTGATGAGGTATATCAAGAAAATGTTTATGTTCCAGAGAAGAAGTTTCACTCATTCAAGAAGGTATCACGGTCCATGGGATATGGTGAGAATGATATAACCTTAGTATCTTTTCAATCAGTCTCCAAAGGCTACCATGGGGAGTGTGGGAAACGAGGAGGTTATATGGAGGTGACTGGGTTTTCTGCAGAAGTGAGGgaacaaatatataaagtgGCATCTGTCAACCTTTGTTCTAATATCTCTGGTCAAATTCTTGCAAGCTTGATCATGAGTCCACCTAAGGTTGGAGACGAGTCCTATGAATCATTCATGGCTGAGAAGGGAAATATTTTGGCATCCCTTGCTAGGCGTGCAAAGACACTAGAAGATGCATTCAACAAATTAGAGGGTGTAACATGTAACAAAGCAGAAGGGGCAATGTATCTGTTTCCCCAAATTCGCCTGCCTGAAAAGGCTATCAAAGCTGCAGGCGCTGCAAATACAGCTCCTGATAACTTATATTGTAAACGCTTGCTTAATGCCACAGGAATAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGGTTCCTGGCACATGGCATTTTAGGTGCACCATATTGCCTCCAGAAGAAAAGATTCCGGCCATTGTCTCCCGCTTGACAGAGTTCCATGAAAAATTCATGGATGAGTTCCGTGACTGA 1623 0.4338 MRKSAADRFRHLSTRSLLLLRHHHHIRRPFPSSSSSSSLSPFSRSRFLSSTPFSMASDSPFPVTVHNINPKVLKCEYAVRGEVVTLAQNLQTELQANPGSRPFDEVLYCNIGNPQSLGQPPITFFREVLALCDYPAILDRSETQGLFSADAIERAWQIVDQIPGRATGAYSHSQGIKGLRDTIAAGIEERDGFPANPDDIFMTDGASPAVHNMMQLLIRLKNDGILCPIPQYPLYSASIALHGGCLVPYYLDEATGWGLEISELKKQLEAAKSKGISVRALVVINPGNPTGQVLSEENQRDIVEFCKQEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGENDITLVSFQSVSKGYHGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLIMSPPKVGDESYESFMAEKGNILASLARRAKTLEDAFNKLEGVTCNKAEGAMYLFPQIRLPEKAIKAAGAANTAPDNLYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPPEEKIPAIVSRLTEFHEKFMDEFRD 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3065 540 CDD AAT_like 153 529 - -
Ssu4g3065 540 Gene3D - 168 414 IPR015421 GO:0003824
Ssu4g3065 540 Gene3D Aspartate Aminotransferase, domain 1 67 538 IPR015422 GO:0003824
Ssu4g3065 540 PANTHER ALANINE AMINOTRANSFERASE 55 539 IPR045088 GO:0008483
Ssu4g3065 540 SUPERFAMILY PLP-dependent transferases 66 534 IPR015424 -
Ssu4g3065 540 Coils Coil 426 446 - -
Ssu4g3065 540 Pfam Aminotransferase class I and II 165 522 IPR004839 GO:0009058|GO:0030170
Ssu4g3065 540 Gene3D - 117 167 - -
Ssu4g3065 540 PANTHER ALANINE AMINOTRANSFERASE 2 55 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3065 Ssu-Chr4 78186045 78192065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3065 K00814 - gmx:100776235 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3065 4 78186045 78192065 Ssu4g3065 4 78186045 78192065 ECH