Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3062 ATGAGAGAGCCCAATAAGTCCTCCAAAACCGCATCGCCAGCTCCCTCCTTCCCTCTCATTCTCGACATCGATGATTTCAAGGGAGATTTCTCGTTCGACGCGTTGTTCGGGAACCTGGTGAGCGAGCTTCTTCCGTCTTTCAAATTGGAAGAAGCGGAATCGGACGGCGGAGATGCTCTGCCAAACGGGCATCTCCGAGCGCCGTCCGATGCGTCCAAGTACTCGCAGGGGATTTCGAGTCCGTTGTTCCCCGAGGTTGAGAAGCTCTTGTCGCTGTTCAAGGATTCTTGTAAGGAGCTGCTTGAGCTTCGTAAACAGATTGATGGGAGACTCTACAATCTTAAGAAAGATGTTTCTGTTCAAGACTCTAAGCATCGAAAGACACTTGCTGAGcTAGAGAAAGGTGTGGATGGATTGTTTGATAGCTTTGCGAGGTTGGATTCGCGAATTTCAAGTGTTGGCCAGACAGCTGCAAAGATAGGTGATCATCTCCAGAGTGCAGATGCACAGCGAGAAACTGCCAGTCAAACTATTGAGTTGATAAAATACTTAATGGAGTTCAATAGCAGCCCTGGCGATCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACGGTCATTTGCTGAAGAAGATATCGGAAGACATGGAATACCTGTCCCATCAGCTGTGGGAAATGCAACTGCTAGCAGAGGATTAGAAGTTGCAGTTGCTAATTTACAGGATTACTGCAATGAACTGGAGAATAGATTGCTTTCTCGGTTTGATGCAGCATCACAGAAAAGAGAATTGACCACAATGGCAGAATGTGCCAAAATTTTGTCTCAGTTCAACAGGGGTACAAGTGCCATGCAACATTATGTGGCAACACGTCCAATGTTCATTGATGTGGAAATAATGAACGCAGACACTAAGCTGGTTCTTGGTGACCAGGCTGCCCATGCTAGTCCTAATAATGTTGCTCGTGGGCTTTCCTCCTTGTACAAAGAAATCACAGATACTGTTCGTAAAGAGGCTGCAACAATCACGGCTGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGCGAGTTTTAGAGCAGCGAATCACTGCCCTTCTGGACAAACTGTTAGAGAAACCATCTCTTGTCAATTTACCTTCCATGGAGGAAGGTGGGCTCCTATTATATCTTAGAATGCTGGCAGTGGCATATGAAAAGACCCGAGAACTTGCAAGAGATCTACAAGCTGTGGGATGTGGTGACTTGGATGTTGAGGGTCTAACAGAGTCCCTATTTTCAAGTCACAAGGATGAATACCCTGAATACGAGCAGGCATCTCTTAGGCAATTATATAAAGTGAAGATGGAAGAATTGCGAGCTGAAAGCCAGCAGATTTCTGATTCATCTGGGACAATTGGACGCTCAAAAGGGGCTTCAGTAGTTTCTTCTCAGCAGCAAATATCTGTTACTGTTGTGACAGAGTTTGTGCGTTGGAATGAAGAAGCAATCTCAAGATGCAATCTCTTTGCTTCCCAGCCTGCTACACTTGCAACCCATGTAAAAGCAGTGTTTACTTGCCTGCTAGATCAAGTTAGTCAATATATAGCGGATGGGCTTGAACGGGCTAGAGACACCCTGACTGAAGCAGCTAATTTGAGGGAAAGATTTGTGCTGGGTACAAGTGTTACCCGTAGAGTGGCTGCTGCAGCTGCATCTGctGCAGAGGCGGCAGCTGCTGCTGGTGAAAGTAGTTTCAGATCTTTTATGATTGCTGTACAACGTTCTGGAAGCAGTGTAGCTATTATTCAACAATACTTTGCTAATTCTATATCTCGGCTTTTGCTCCCTGTGGATGGTGCACATGCTGCTTCTTGTGAGGAAATGGCAACGGCAATGTCAAGTGCAGAGGCTGCTGCTTATAAAGGATTACAACAGTGCATTGACACTGTCATGGCTGAGGTGGAGCGGTTGCTTTCAGCTGAACAAAAGGCTACAGATTATCGATCACCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGTACAAGAGTTGTTGCTTATCTTTCACGTGTGCTGGAGTCTGCATTTACTGCTCTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGttgGGGAATCGCTTGCACAAGGTGCTTCTAAACCATTGGCAGAAGTATACTTTTAATCCAAGTGGGGGATTGCGACTTAAGCGTGACATTACTGAATATGGAGAATTTGTGCGTAGTTTTAATGCTCCTACTGTTGATGAAAAGTTTGAATTGTTGGGCATAATGgcaaatgtatttattgttgCTCCTGAGAGCCTTTCAACTTTGTTTGAGGGCACACCTAGCATTCGGAAAGATGCACAAAGATTTATTCAACTTCGGGATGACTACAAGGCTGCCAAACTTGCGTCCAAACTGAGTTCCTTGTGGTCTTAA 2478 0.4508 MREPNKSSKTASPAPSFPLILDIDDFKGDFSFDALFGNLVSELLPSFKLEEAESDGGDALPNGHLRAPSDASKYSQGISSPLFPEVEKLLSLFKDSCKELLELRKQIDGRLYNLKKDVSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIGRHGIPVPSAVGNATASRGLEVAVANLQDYCNELENRLLSRFDAASQKRELTTMAECAKILSQFNRGTSAMQHYVATRPMFIDVEIMNADTKLVLGDQAAHASPNNVARGLSSLYKEITDTVRKEAATITAVFPSPSEVMSILVQRVLEQRITALLDKLLEKPSLVNLPSMEEGGLLLYLRMLAVAYEKTRELARDLQAVGCGDLDVEGLTESLFSSHKDEYPEYEQASLRQLYKVKMEELRAESQQISDSSGTIGRSKGASVVSSQQQISVTVVTEFVRWNEEAISRCNLFASQPATLATHVKAVFTCLLDQVSQYIADGLERARDTLTEAANLRERFVLGTSVTRRVAAAAASAAEAAAAAGESSFRSFMIAVQRSGSSVAIIQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIDTVMAEVERLLSAEQKATDYRSPDDGMAPDHRATSACTRVVAYLSRVLESAFTALEGLNKQAFLTELGNRLHKVLLNHWQKYTFNPSGGLRLKRDITEYGEFVRSFNAPTVDEKFELLGIMANVFIVAPESLSTLFEGTPSIRKDAQRFIQLRDDYKAAKLASKLSSLWS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3062 825 Coils Coil 242 262 - -
Ssu4g3062 825 MobiDBLite consensus disorder prediction 54 75 - -
Ssu4g3062 825 Pfam Exocyst complex component Sec10 490 819 IPR009976 GO:0005737|GO:0006887
Ssu4g3062 825 Pfam Exocyst complex component Sec10 137 474 IPR009976 GO:0005737|GO:0006887
Ssu4g3062 825 Gene3D - 658 819 - -
Ssu4g3062 825 PANTHER EXOCYST COMPLEX COMPONENT SEC10-LIKE PROTEIN-RELATED 12 824 - -
Ssu4g3062 825 PANTHER SEC10 12 824 IPR009976 GO:0005737|GO:0006887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3062 K19984 - gmx:100820430 1466.06