Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3061 ATGGCGGACAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGATTACTCCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGATTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGGCTTCTTTCATTCATGATGGATAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGTTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAATGCAACATTCAGGAAGATGTTCCCTGAGTATGTGGAGAACTACAACCAGCAACTGCTTTCTGAGCAGGATGCTCCAGAGAGGGTCTCATCAGAGACGTCTCCTAACAAGAGTTCGGGGCCAGTTTTGGAAAAGAAATTAGAATCCACAGGAGACGACATGAGAAGAGTAGATGGGTTGAAGGATGTCAGAAAAAACAGAAAACCATTTCCAACGTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCTCTGCTTCAGCTGTGA 717 0.431 MADKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTVEKQRLAKSSLSFNCKNATFRKMFPEYVENYNQQLLSEQDAPERVSSETSPNKSSGPVLEKKLESTGDDMRRVDGLKDVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3061 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 34-LIKE 3 238 - -
Ssu4g3061 238 CDD UBCc 7 157 IPR000608 -
Ssu4g3061 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Ssu4g3061 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Ssu4g3061 238 SUPERFAMILY UBC-like 5 159 IPR016135 -
Ssu4g3061 238 SMART ubc_7 8 162 - -
Ssu4g3061 238 MobiDBLite consensus disorder prediction 167 196 - -
Ssu4g3061 238 MobiDBLite consensus disorder prediction 167 185 - -
Ssu4g3061 238 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Ssu4g3061 238 Pfam Ubiquitin-conjugating enzyme 9 123 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3061 Ssu-Chr4 78084071 78086526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3061 1 238 Miscellaneous Gene Families AT1G17280 77.083 3.02e-134 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3061 K04554 - gmx:100778181 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3061 4 78084071 78086526 Ssu4g3061 4 78084071 78086526 ECH