Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3047 ATGatctcaagtaaaaaaaatgtttttggcaCCAAGGGGAAAACGGGTTTGGATTTCGTGGTTTTGGTGTTTACAGTCTCATGGTTTTGTTTGACTACTATATGTGCCTCGGCTACAAAACAAGCATACCCACCAACACAACAACCGAACCAGAAGCTAAGGTTTGGCCAAAATGGAGAATTCAAGATATTGCAGGTGGCAGATATGCACTATGCAGATGGCAGGACCACACCTTGCTTGGATGTGCTTCCTTCCCAGAATTTTTCTTGCTCTGACCTCAACACCACTGTCTTTCTTAACAGAATGATCCAAGCTGAGAAGCCAAATCTTATTGTCTTCACTGGAGATAATATCTTTGGGTTTGATTCCTCGGATTCAGCTAAATCATTGGATGCTGCATTTGCTCCTGCAATTGCATCAAACATTCCTTGGGTAGCTGTTTTGGGCAACCATGACCAGGAAGGAACCCTCTCTAGGGAAGGGGTGATGAAACATATTGTTGGGATGAAAAACACCTTATCTAAATTCAATCCTCCAGAAGTACATATCATTGATGGTTTTGGGAACTATAACTTGGAGGTTGGAGGAGTTGAAGGCactgattttgaaaataagtcaGTGCTCAACCTGTACTTTCTTGATAGTGGAGATTATTCCAAAGttcctttaatttttggttatgATTGGATCAAGCCATCCCAGCAACTTTGGTTCCAACGAACATCTGCTAAGCTTAGGAAAGCATACATAAGTGGACCAATGCCTCAGAAAGAAGCTGCTCCTGGTCTTACATATTTCCACATCCCTCTACCAGAATATGCTAGTTTTGATTCATCAAACTTCACAGGTGTGAAACAGGAACCGGATGGCAATGGCATTAGCTCTCCTTCTGTGAACTCTGGCTTCTTCACAACCTTGGTTTCAGCTGGAGATGTGAAGGCAGTTTTCGTTGGCCATGATCACATCAATGACTTCTGTGGCGAGCTAACGAATATACAACTTTGTTATGGTGGGGGATTCGGATACCATGCTTATGGAAAGGCAGGGTGGCCTAGGAGAGCAAGAGTGGTGGTAGCTAGCTTGGAGAAAACGGGGAAAGGCAGTTGGGGAGACGTCAAGTCAATTAAAACATGGAAGCGCCTTGATGATCCACATCTTACTGGAATTGATGGCCAGGTCCTGTGGAGCAAGAGCTCTGGTGGTAAGATACCCTGTGATACTTGTAGTACTATTCTTCTTGTTCTTAAACTGTGA 1254 0.4187 MISSKKNVFGTKGKTGLDFVVLVFTVSWFCLTTICASATKQAYPPTQQPNQKLRFGQNGEFKILQVADMHYADGRTTPCLDVLPSQNFSCSDLNTTVFLNRMIQAEKPNLIVFTGDNIFGFDSSDSAKSLDAAFAPAIASNIPWVAVLGNHDQEGTLSREGVMKHIVGMKNTLSKFNPPEVHIIDGFGNYNLEVGGVEGTDFENKSVLNLYFLDSGDYSKVPLIFGYDWIKPSQQLWFQRTSAKLRKAYISGPMPQKEAAPGLTYFHIPLPEYASFDSSNFTGVKQEPDGNGISSPSVNSGFFTTLVSAGDVKAVFVGHDHINDFCGELTNIQLCYGGGFGYHAYGKAGWPRRARVVVASLEKTGKGSWGDVKSIKTWKRLDDPHLTGIDGQVLWSKSSGGKIPCDTCSTILLVLKL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3047 417 PIRSF Ptase_At2g46880 11 395 IPR011230 -
Ssu4g3047 417 PANTHER - 19 400 - -
Ssu4g3047 417 Gene3D - 89 375 IPR029052 -
Ssu4g3047 417 Pfam Calcineurin-like phosphoesterase 61 322 IPR004843 GO:0016787
Ssu4g3047 417 CDD MPP_Dcr2 59 346 - -
Ssu4g3047 417 PANTHER PHOSPHOESTERASE, METALLO-DEPENDENT PHOSPHATASE-LIKE PROTEIN-RELATED 19 400 - -
Ssu4g3047 417 SUPERFAMILY Metallo-dependent phosphatases 59 370 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3047 Ssu-Chr4 77879838 77881879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3047 - - gmx:100794167 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3047 4 77879838 77881879 Ssu4g3047 4 77879838 77881879 ECH