Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3045 ATGATTCAGGTTAACGATGAGGTGGAAGCAGAAAAATCAGCTTCgaagaagaaaacaagaacGACGGAGAAGAAGGAGCAGTTGCTGCCTTCGATGATAAAGAACAAGGAGAAGAGATCGGAGGTGCACGCGAAGCTGAAGCGCCAGAAGAAGCTCGAGAAGCGTGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAGAGCGCTCGAGCTCGGCGAGGAGCCTCCGGAGAAGAAGGCCCCTCGCACCATTGAGAACACGAGAGAATTCGACGAGACCGTTTGCAAGCCCGACGACGAAGAGTTATTTGCTGGGAATGATGCTGATGAATTCAGGTCAATTTTGAATCAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCAATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAATAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGAAGGGAACCAGATGCTCTCTTAATCATTGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAGCTTGTTTTGCGCAAGGATATCAAGAATCATGGAATTCCAACCAGTCACAAGCCTGAGCTTGTGTTGAATAACTTCACAACACGTCTTGGGCATCGAATGGGAAGattgaTACAGTCACTTTTTCCACAAGAGCCAGAATTTAAAGGCCGACGAGTAGTCACCTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGtatatttttgaaaccaaaGAAGTTAAAAAAGCCGAGTCTAAAGGTAAAAAGGACAAAGATGGCAAGAGTGAGAATGTCGCTGAACAGAAAACAATTGCCCGTCTTCAGGAATGTGGCCCTCGTTTCACATTAAAGTTGATTAGCCTGCAGCATGGAACATTCGACACTAAGGGTGGGGAATATGAATGGGTTCACAAGGTAATTTTCTTGCTAACCAACTTGCTGTTTCAATTCTTGGTCTGA 1059 0.4363 MIQVNDEVEAEKSASKKKTRTTEKKEQLLPSMIKNKEKRSEVHAKLKRQKKLEKRAKAKARDAALKRALELGEEPPEKKAPRTIENTREFDETVCKPDDEELFAGNDADEFRSILNQQQTPKILITTCRFNSTRGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKNKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRKDIKNHGIPTSHKPELVLNNFTTRLGHRMGRLIQSLFPQEPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGKSENVAEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKVIFLLTNLLFQFLV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3045 352 Gene3D - 121 317 - -
Ssu4g3045 352 PANTHER RIBOSOME PRODUCTION FACTOR 1 22 338 - -
Ssu4g3045 352 ProSiteProfiles Brix domain profile. 121 327 IPR007109 GO:0006364|GO:0019843
Ssu4g3045 352 Coils Coil 43 63 - -
Ssu4g3045 352 MobiDBLite consensus disorder prediction 1 84 - -
Ssu4g3045 352 MobiDBLite consensus disorder prediction 56 84 - -
Ssu4g3045 352 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 22 338 IPR044281 GO:0006364|GO:0042134
Ssu4g3045 352 SUPERFAMILY Class II aaRS ABD-related 121 324 - -
Ssu4g3045 352 SMART Brix_2 124 321 IPR007109 GO:0006364|GO:0019843
Ssu4g3045 352 Pfam Brix domain 133 319 IPR007109 GO:0006364|GO:0019843
Ssu4g3045 352 MobiDBLite consensus disorder prediction 9 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3045 Ssu-Chr4 77865608 77869062 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3045 K14846 - gmx:100791194 556.599