Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3044 ATGGTGGTGGCTGCGGGTGCTAAGTTCAATTTGAGAAGAGGGAACGGTTCTTCTCATAATGTTGTCAATGGTTATAGCAGTGATGGAGATCTTTCCAGAATTAATAAAAGTGGGTGTTTTTCATCAATGGCGGAGGTGGATAGAGACCCTTCTTGCGTTTCATTCACCACTTTTAATATCCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAGATTATTCTGGTTGGCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCCGAATCATCTTCCATTATGTGCCTCCAGGAGTTTTGGGTTGGCAATGAAGAACTCGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGCTACGATCTCTTCAAGCTTGCAAGAACCAACAACCGTGGAGATGGTCTGCTGACTGCTATACGTAAAGAATGTCTAAGAGTTGTGAATTATCAAGAGTTGCTTTTTAATGATTGTGGCGATCGCGTTGCTCAGTTGTTACATGTTCAGTCAGTTGCCCCCTTTGTACAAAACCAAAAAGGCAGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCATGATTCCAGTCTGTGCGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTTTCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGCGGGCATGTTTACAAGTTCTTAAGGTCACAGGGGTTTGTATCATCGTATGATATTGCTAATCAATACAGTGACAGTTATGCAGATGCGCACAAGTGGGTTAGTCACCGAAATCATAGAGGGAATATATGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCGCGTAAGCCTTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAAGATCATTATCTGAAGATGATGCATTTGCCTTCCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTGTAGTTTCTCAGAAGCACTCCGTCAGGTAAAGTTAATTGGTGTGCCCTATGGACTATGCTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGATGTTGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAGAAAATTTGGAATTCTACATGTCCAGAACATGTGTTGGAAAATTTGAATTGGTGTATGGAAGATGGTAACACAGAACAGGAGCAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCCATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGACTACTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTGCACCAGCAAGGATGCGATGTTCCAGCTCACAAAACTATAATTAG 1431 0.4235 MVVAAGAKFNLRRGNGSSHNVVNGYSSDGDLSRINKSGCFSSMAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRLFWLARNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYDLFKLARTNNRGDGLLTAIRKECLRVVNYQELLFNDCGDRVAQLLHVQSVAPFVQNQKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELFQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKRSLSEDDAFAFLKGDNYADSVTYCSFSEALRQVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCPEHVLENLNWCMEDGNTEQEQQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFAPARMRCSSSQNYN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3044 476 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 24 470 - -
Ssu4g3044 476 SUPERFAMILY EF-hand 351 398 IPR011992 -
Ssu4g3044 476 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Ssu4g3044 476 Gene3D Endonuclease/exonuclease/phosphatase 40 468 IPR036691 -
Ssu4g3044 476 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Ssu4g3044 476 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 24 470 - -
Ssu4g3044 476 Pfam Endonuclease/Exonuclease/phosphatase family 84 267 IPR005135 GO:0003824
Ssu4g3044 476 SUPERFAMILY DNase I-like 47 268 IPR036691 -
Ssu4g3044 476 SUPERFAMILY EF-hand 275 399 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3044 Ssu-Chr4 77848219 77851463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3044 118 470 EF-hand Containing Proteins AT1G02270 63.333 1.91e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3044 - - gmx:100788191 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3044 4 77848219 77851463 Ssu4g3044 4 77848219 77851463 ECH