Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3026 ATGGTTATTGATCGCGGCAAATCGCGGTCTCGCAGTACAGAGCAGACATCTTCTGCGATCTCGACATCATCGTGTCTTGGTTCAGCAACACGCGAGGGCCGATCGGAGCAGAGCGCCACTATCCTACTCCTACGAAGTCGACCTTCTTCTCCGACGAAGGCGAAGTCGTCCTTCTTCTCCGACGAAGGCGAAGTCGTCCTTCTTCTTCGACTAAGTCTCCTTCACACCTTCGTTACACCGCCTTCTTCTTATTCTTCCGTTCTCACTCTGAAACTGTACAAACCCCAATCCAAACGATTCGTTTTGCATTTCGCGCTTCCAAGGCGTTCGCGCACATCTctagaatcttcttcttctttctctcctcCGAGGAAAGAGAGGGAGGACGTTGCAGAACGGCTTTACGGAGAAGAATATGTTTACCCCCAAAACGATGACGTTTTCGGGGACGAAGAAGAACGGGAGGGGAAACTTGGAAGAGCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGACGCAGCATACTTACTTGATATGTTCAGGCCTTACGGAACCATTCTGTCGGTCGAGGTTTGCCGGAATGCTGAGACAGATGAAAGTAAGGGGTGTGGTTATGTCACAATGGGATCTATATACTCGGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGTTAGTAGTGTGAAACTGTCTCCATTGCTTGTATTAATTTCATTATGCCCTAGGTGTTTGATCTga 744 0.4731 MVIDRGKSRSRSTEQTSSAISTSSCLGSATREGRSEQSATILLLRSRPSSPTKAKSSFFSDEGEVVLLLRLSLLHTFVTPPSSYSSVLTLKLYKPQSKRFVLHFALPRRSRTSLESSSSFSPPRKEREDVAERLYGEEYVYPQNDDVFGDEEEREGKLGRACEVYVCNLPRSCDAAYLLDMFRPYGTILSVEVCRNAETDESKGCGYVTMGSIYSARNAVAALDGSVSSVKLSPLLVLISLCPRCLI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3026 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 226 IPR000504 GO:0003723
Ssu4g3026 247 SUPERFAMILY RNA-binding domain, RBD 142 226 IPR035979 GO:0003676
Ssu4g3026 247 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 82 226 - -
Ssu4g3026 247 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g3026 247 CDD RRM_SF 164 225 - -
Ssu4g3026 247 PANTHER OS08G0117100 PROTEIN 82 226 - -
Ssu4g3026 247 SMART rrm1_1 163 238 IPR000504 GO:0003723
Ssu4g3026 247 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Ssu4g3026 247 MobiDBLite consensus disorder prediction 12 37 - -
Ssu4g3026 247 Gene3D - 107 236 IPR012677 -
Ssu4g3026 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3026 Ssu-Chr4 77350079 77352573 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3026 - - vra:106780336 219.55