Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3024 ATGGAGCTCGACCTCCGTTCATTCCTTCACTCCACCTCCGACGACGACGCCGACGCCGCTCCCCACCGCACCATCGACGAAATACTCAACGACTGCgacacttcttcttcttcctcaccCTCTCctccttcctctccctctaaCTCCCTCTCTTCACACACTTCCAATTCCCATCCCCAAAACCCCACGCTCCCACAAAAACCGCTCCAACCCGCACCCGATTCATTTTCCCGGGTCAGACCCGCTGAATTCCCCGACCGCACACGCGCTCCGCGCCCGTTCTCCTCTCTCCTTCACGGCGTGCGTTCCAATGCGAAGCCCGGCGCCGCGCTCGCCGCCGCCGCAGCGGCGTCGCGATCCGTCCCCACGCCGCACGCGGCGGCGATCATCTCCAGGAGGAAATTCGCGGCCGCGAACAGTGTCGAATCGAGTTCGATCGCTGCCACCGGCGACGATTATTCCGATGTTTCTTCCAAAGGCGAATCGGGCGAGCCTAGCGAGAAATTCGATCCGGTGCTGCGGAAAATGGAAACTCAATCTAGTGAAAGTGCTTCTGTTATTGGTGAACGTTTAGAGAGTGATGCAGAAGTTGCCACTGATTCAAAGGCTGGCAGTGCTGACATTCAGGTGCACagtgataatgataatgataatgattcTGATATCGTGAGTGAGGAGAAGAGGGATTTGGATGAGGTTATCCGTGATCATGAGAAGGATATGAATTCTGCACCGTTTGATGATGGTGATCGTGATTCTGATGGAAATGATGGTGGTGATGAGAGAATCACAGCTACGGATGCAGCTGTGGGAACAGGAGAAGTAGTGAATAATGGTAGTGGTTCTATGGAAGATGTTAAGAATGAGGTGAGTGTTGGTGGCGGTGATGATGGTAGTTCATTAGGTGATGTTGCGGAGCTGGTAGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTGCTAAGAGAGcggagaagaaaagagaggcTTCGATGAAGCCACTTGAATTGGCTGAAGAACTGGAGAAGAAGCGTGCTTCGACCGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGGCTCGAGGGTGTTCGGAGAGGGTCCACAACGTTGGGATACTTTGATGTTGATGCCGATAATGCAGTCACGAGGGCCATTTCGTCCCAAACGTTCAGGCGGGAGCAAGGTTCCGCCCGAGCCTTGGCGGTTCATGCTAATTACATTGCAGTAGGAATGGCAAAAGGGCTCATTGCTGTATTCCCCAGTAAATATTCCATTCATCATGCTGACAACTTTGATGGAAAGATGTTGATGCTTGCTATACAAGGTGATCGGTTGCATGCTCCAGTGACGTCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTACGGTGATGGTCATCTTACCCTGTGGGATGTGCAGAAAGGGGTAGTGGCAAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACATTGTTTCTAGGACAGGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGACTGTAAGGGTCTGGTTCTCTTCCACATTATCTCAGTGGTTCCTTTGTTTAGTAGATTCTCGATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACGGGCTTGGTGCTTTCAGCTTCACCACTTCTTTTTGATGACTTCAGTGGAAGTGCTTCACCTTTTTCTCAGGGAAACACCACAGCCCCATCCAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGTGGAGATGCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTGTTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCTCAACTCTCTAGGCCAGATGGAGTTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACACAAACATGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAGGTTCTGGTTGCAAAGTTGGTCAAATCGGAATTAAAAGTCTATGGAAGATGGTCTCTTGACGGTGCGGCTGTAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAAATGGACAACTGTATTTATTTTCCAAGGATGGAACTGTAATTCACCAAACAAGTTTTGCTGTAGATGGTACTGGAGGAGATGATCTAGTCTCTTATCATACTCATTTCATCAATATATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCCATTTATATACTTGGTCCGACACACCTTCTTATTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTCGGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCATGGGGTTGTTGACCTTCCTAGAACCTTGAATGCTGTACATGAAGCCATAATGCCGTTCTTGGTGGAGTTGCTTACATCATATGTTGACGAAGTGTTCTCCTATATTTCGGTGGCATTCTGCAACCAAATTGGAAAACTGGACCAATCCAATGATTCGAATAATAGAAACAATTCAGTGCATTCTGAGATAAAGGAGCAATACGCCCGTGTTGGTGGAGTTGCTGTTGAGTTTTGTTGTCATATCAAACGGACAGACATTctttttgatgaaattttctCCAAGTTCATGGATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGATATGCTTGGATCTCTACCTCCCGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGTTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGATTATGCCGGGAGCATGGACTTTATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGAGCACCTCTGGAAGAGCTGTTTACTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACAGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGAACTATTCCACCCACACGCTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAAGACTCCTGTACTCCAAAATCACAGACAGTTTCAGACTTTGTATCCAGACGACCCCACCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTAGATGTCCTCAGATGTGCTTTCATGGAAGATGAAATTTCAAATGCCTGCTCATCTTCGCTGGATTCAGCCAATAAACCTATAGAggaagcaaaaaaagaaaatgataatgtTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCCCATAGATACAACCTCTAGTAGTGGTGATGATGGGTTGATAAAAGAATGGCCTTCCAAGGACATAGGTTATCTGTTTGAGTTCATTGCATATTATGTTGCTCTTCAAAGAGCTAAGATTTCGAAGGGTGTGCTGTGTCAAATATTGGAATATTTGACATCAGATAGTCACTTTTCAACTAATGTTTCTGTTCATGGTTCAACTccaaaaaatagagagaagcAAGTGCTTGCACTTTTGGAAGTACTTCCCGAGTCAGACTGGGATGCGTCATTTGTGCTAGATCTATGTGAGAGAGCCAAATATCATCAGgTTTGTGGATTGATTCATAGTGCCAGACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTGGATGAGCCTGTTCATGCCTTCTCCTTTATTAACAAAGCATTCTCACAGTTGACTGACAATGACCATGCAGCTTTTTGGTCAGCAGTCATATTGCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGTGCATTTCATATGGTTATCAGTCATTTTAGTGATGAAAGTTCCCGTATCATAACTGACCTTCACTCTCATCCAAGAagtcttttcctttatttaaagACACTCATTGAGCTTCACTTATTTGGCACCCTAGACTTGTCTAATTTGAGAAAGGATGATACTACAAATCCTCTTAATGGAAGGCAGGTTAAGGATCACCCACAAGGAGTCAAAGATTACTTAGAGAATATATCTAATTTCCCCAAGTACATGCGTGAAAATCCTATTCATGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCAGTACGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGGCTGTGCCAAGAATATGGCATTATAGATGCAGCTGCCTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTTACTTACACTTTCTGATctaaatgataaatttgttgagcTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCATCGCACAGTTGGTTCTTCGCATATGAAAGTATTCAACACTGTTTTAAGAACAAAGGAGGTAAGTGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCATTGATGGATTCATATGTTGAAGAAAGAGCAtatgaaagtaaaaattattttggaacGCTAGCTGGATCAGCAGATTCACAACAGGACAAAGACACCTATAAAAGCAGTTGGAAAATTTCAAAGTCCCGGAATGGTCATATCTTGAGAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATTGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTCCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACCATATTGGGAATGCTGGGAACATATGGTTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTAATAGAGGATGATACGTTTTATACTATGAGTGTACTCAAGAAAGGGGCATCCCATGGATATGCTCCCCGGAGTCTCGTGTGCTGTATTTGTAATTGCTTCCTTACAAAGAACTCCGTTAGCTCTGGAGTTCGGATTTTCAACTGTGGCCATGCAGTTCATCTCCAATGTGAAGTTTCGGAAATTGAGGCACCAAGCAGAGGATGTTCATCTGGATGCCCTGTATGCATGCCTAACCAGAAATCCCAGCAATCTAGAAACAAATCAATCATTGCAACGAATGGCTTGATCAATAAATTCTCATCAAGGCGCCAATACCCCCATGGAAGTACCATTCATCCTCATGACAGTGATTTATCAGAGAATATGTATGGACAGCAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAATCAGAGATTTATACAAATAGAAAACTTGCCTCAGTTGAAGCTTGCTCCACCTGCTATGTACCATGAAAAGGTAAGTAGAGTGACAGACTTTCTGCCCGGGGAAAGTAGCAATAGTTCTGCTGCTATTGAGAAACAAAGTAGAAACAAGCAAAACCGGGAGCTGAGAGTTAAGGGCTCATCAATTCGATTTCctttaaaatcaagtatatttgGCAAGGACAGGACAAATAAGCGGTGA 5706 0.4229 MELDLRSFLHSTSDDDADAAPHRTIDEILNDCDTSSSSSPSPPSSPSNSLSSHTSNSHPQNPTLPQKPLQPAPDSFSRVRPAEFPDRTRAPRPFSSLLHGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKFAAANSVESSSIAATGDDYSDVSSKGESGEPSEKFDPVLRKMETQSSESASVIGERLESDAEVATDSKAGSADIQVHSDNDNDNDSDIVSEEKRDLDEVIRDHEKDMNSAPFDDGDRDSDGNDGGDERITATDAAVGTGEVVNNGSGSMEDVKNEVSVGGGDDGSSLGDVAELVEERLEELESRRAAKRAEKKREASMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARALAVHANYIAVGMAKGLIAVFPSKYSIHHADNFDGKMLMLAIQGDRLHAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTTAPSSSISSMMGGVVGGDAGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTCSSTENMSAEAVERVSLLAIAWERKVLVAKLVKSELKVYGRWSLDGAAVGLAWLDDQMLVVLTSNGQLYLFSKDGTVIHQTSFAVDGTGGDDLVSYHTHFINIFGNPEKAYHNSVAVRGASIYILGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLNAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKLDQSNDSNNRNNSVHSEIKEQYARVGGVAVEFCCHIKRTDILFDEIFSKFMDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFTVLQNSQKESATALGYRMLVYLKYSFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTPKSQTVSDFVSRRPHLNLYLLLKLDTEATLDVLRCAFMEDEISNACSSSLDSANKPIEEAKKENDNVTETQNALVQNTVDALIQIIDMNIVPIDTTSSSGDDGLIKEWPSKDIGYLFEFIAYYVALQRAKISKGVLCQILEYLTSDSHFSTNVSVHGSTPKNREKQVLALLEVLPESDWDASFVLDLCERAKYHQVCGLIHSARHEYVAALDSYMKDVDEPVHAFSFINKAFSQLTDNDHAAFWSAVILRIPELVELSREGAFHMVISHFSDESSRIITDLHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDTTNPLNGRQVKDHPQGVKDYLENISNFPKYMRENPIHVPDDLIELYLELLCQYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSALLLTLSDLNDKFVELDAAVEAVVLNHRTVGSSHMKVFNTVLRTKEVSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSYVEERAYESKNYFGTLAGSADSQQDKDTYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDTFYTMSVLKKGASHGYAPRSLVCCICNCFLTKNSVSSGVRIFNCGHAVHLQCEVSEIEAPSRGCSSGCPVCMPNQKSQQSRNKSIIATNGLINKFSSRRQYPHGSTIHPHDSDLSENMYGQQQISRFEILSSLQKNQRFIQIENLPQLKLAPPAMYHEKVSRVTDFLPGESSNSSAAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKDRTNKR 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3024 1901 Pfam Golgi CORVET complex core vacuolar protein 8 926 1110 IPR025941 -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 137 156 - -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 137 284 - -
Ssu4g3024 1901 Gene3D - 367 526 IPR015943 GO:0005515
Ssu4g3024 1901 SUPERFAMILY RING/U-box 1703 1761 - -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 1 101 - -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 1854 1882 - -
Ssu4g3024 1901 CDD RING-H2 1710 1759 - -
Ssu4g3024 1901 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 486 IPR001680 GO:0005515
Ssu4g3024 1901 Coils Coil 305 332 - -
Ssu4g3024 1901 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Ssu4g3024 1901 Coils Coil 1130 1150 - -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 1854 1868 - -
Ssu4g3024 1901 Pfam Region in Clathrin and VPS 1427 1495 IPR000547 GO:0006886|GO:0016192
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 212 261 - -
Ssu4g3024 1901 SUPERFAMILY WD40 repeat-like 392 736 IPR036322 GO:0005515
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 30 63 - -
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 157 175 - -
Ssu4g3024 1901 SMART WD40_4 436 477 IPR001680 GO:0005515
Ssu4g3024 1901 SMART WD40_4 691 728 IPR001680 GO:0005515
Ssu4g3024 1901 PANTHER VACUOLAR PROTEIN SORTING VPS41 300 1829 IPR045111 GO:0006623
Ssu4g3024 1901 PANTHER - 300 1829 - -
Ssu4g3024 1901 ProSiteProfiles Zinc finger RING-type profile. 1710 1758 IPR001841 -
Ssu4g3024 1901 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1378 1531 IPR000547 GO:0006886|GO:0016192
Ssu4g3024 1901 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3024 Ssu-Chr4 77327652 77339858 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3024 K20178 - gmx:100780869 3261.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3024 4 77327652 77339858 Ssu4g3024 4 77327652 77339858 ECH