Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3023 ATGGCAACATTGACTGCTTCAAGTAACTTAGTCTCTGGAAGTTCTCACGTCTGCCATGGACCAACTGCTTCATATGAGTCTAAAGCAGTCGCAATGGGACTTAGATCTCTAAAGCAGACCAATACTCATAATGGACTAAGAATTTTGAACCCGGTGGATGAGCTACTCAACAGAATCCCAATTAAAACTAATGCAGTGCAAGCTGTGAGGAAGGGACTTCAAAGCAAGAATGCCAGGCCTACAGGTATAATCATATGTGGcatgaatttgatatttatagGAACGGAGGTGGCTCCATGGAGCAAAACTGGTGGGTTAGGAGATGTTCTTGGGGGTCTGCCACCAGCATTGGCAGGTAATGGGCATCGAGTTATGACCATCGCGCCGCGTTATGACCAGTACAAAGATGCATGGGATACAAGTGATATAGTTGAGGTGAAAGTAGGAGATAGAACAGAAAAGGTTCGCTACTTCCATTGCTACAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTATGTTTCTTGCAAAGGTCTGGGGGAAAACTGGAACCAAACTTTATGGACCAGCTACAGGAGATGATTATGAAGACAACCAACTACGTTTTAGCCTGTTTTGCCAGGCAGCTTTGGAAGCACCAAGGGTTCTGAGTCTTAATTCCAGTAAATATTTCTCTGGAACATATGgTGAAGATGTCATTTTCATAGCCAATGATTGGCACACTGCCCTTATCGCCTGCTACTTGAAATCTATGTACCAGTCAGTGGGCATCTATAAGAATGCCCGAGTTGTTTTTTGTATCCACAACATTGCTTACCAAGGCAGATTTGCATTCGCAGACTTTTCACTTTTAAATCTTCCTGACCAATTTAAAAGCTCCTTTGACTTTATTGATGGGCATGTTAAACCAGTGATTGGAAGGAAAATCAATTGGCTGAAAGCTGGAATTATAGAATCATGGTTTGTGATAACTGTTAGTCCAAACTATGCTAAAGAACTAGTGTCAGGTCCAGACAAAGGAGTGGAATTGGACAACATGCTTCGCAAAATTGATGATCGTTTTGTTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCATCCACTGACAAATATATAGCTGTCAAATACAATGTTTCAACGGTATTGGAAGCAAAGTCTCTTCTGAAAGAAGCTCTCCAAGCAGAAGTTGGATTGCCGGTCGACAGAAATATTCCTCTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGCAGCAGCCATTCCCCAATTTATCAAGGAGAATGTTCAGTTGGTAGCCCTAGGAACAGGAAAAAAACAAATGGAAAAACAGCTTCAGGAACTTGAAATATCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGctgattttatattggttcctAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGATCTGTACCTATTGTTGCCTCAACAGGTGGATTAGTTGACACTGTCAAGGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAGTGTTGAATGTGATGCTGTGGATCCTGTGGATGTGGATGCTCTGGCAAAGACTGTCAAAAGGGCCCTTGCAGTCTATGGAACTCCAGCTTTTACAGAAATGATCAAGAATTGCATGGCTCAAGATCTCTCATGGAAGGGACCTGCTAAAAAGTGGGAGGAAGTACTGCTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATAA 1851 0.423 MATLTASSNLVSGSSHVCHGPTASYESKAVAMGLRSLKQTNTHNGLRILNPVDELLNRIPIKTNAVQAVRKGLQSKNARPTGIIICGMNLIFIGTEVAPWSKTGGLGDVLGGLPPALAGNGHRVMTIAPRYDQYKDAWDTSDIVEVKVGDRTEKVRYFHCYKRGVDRVFVDHPMFLAKVWGKTGTKLYGPATGDDYEDNQLRFSLFCQAALEAPRVLSLNSSKYFSGTYGEDVIFIANDWHTALIACYLKSMYQSVGIYKNARVVFCIHNIAYQGRFAFADFSLLNLPDQFKSSFDFIDGHVKPVIGRKINWLKAGIIESWFVITVSPNYAKELVSGPDKGVELDNMLRKIDDRFVGIVNGMDVQEWNPSTDKYIAVKYNVSTVLEAKSLLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAAAIPQFIKENVQLVALGTGKKQMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGSFSVECDAVDPVDVDALAKTVKRALAVYGTPAFTEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3023 616 MobiDBLite consensus disorder prediction 595 616 - -
Ssu4g3023 616 CDD GT5_Glycogen_synthase_DULL1-like 89 590 - -
Ssu4g3023 616 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Ssu4g3023 616 Pfam Starch synthase catalytic domain 90 350 IPR013534 -
Ssu4g3023 616 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Ssu4g3023 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 67 588 - -
Ssu4g3023 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 616 - -
Ssu4g3023 616 Gene3D Glycogen Phosphorylase B; 90 582 - -
Ssu4g3023 616 Pfam Glycosyl transferases group 1 407 528 IPR001296 GO:0016757
Ssu4g3023 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 616 - -
Ssu4g3023 616 Gene3D Glycogen Phosphorylase B; 363 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3023 Ssu-Chr4 77301280 77305002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3023 1 616 Glycosyltransferase AT1G32900 69.467 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3023 K13679 - gmx:100037476 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3023 4 77301280 77305002 Ssu4g3023 4 77301280 77305002 ECH