Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3007 ATGCTGTTGTTGTGCTCGAAAAGGATGTCAAACAAAGCCTTCGTATCAACTcttgtctttcttttcttctccgtGGTGGTGCTCTCTACTCCTCCAGAGGACCCAATCAGGTGCTCTTCAAAGAACACAACCTGCACTATCACAAACTCCTACGGCATCTTCCCTGACCGAAGCATCTGCCAAGCCTCTCAAGTATTGTACCCCACCACTGAGGAAGAGCTCGTGTCAGTGGTTGCATCAGcaaccaaaaacaaaaccaaGATGAAAGTTGCCACTCGTTTTTCCCACAGCATCCCTAAACTGGTGTGCCCAGAAGGCCAAAATGGGTTGCTGATAAGCACCAAATATCTCAACCAAATACTGAAGGTTGATGTGGAAGCAAGGACTGTGAAAGTGGAGAGTGGTGTGACAATGAAGCAGCTCATCAATGAGGCTGCAAAGGTGGGGTTGGCCTTGCCATATGCACCATATTGGTGGGGTTTGACAATTGGGGGGCTTATGGGAACTGGTGCTCATGGAAGCACTTTGTGGGGGAAGGGAAGTTCTGTCCATGATTATGTGGTGGAGCTTAGGATTGTTAGCCCTGCAGGTCCTGAAGATGGATATGCTAAGGTTGAGAGCCTAAATGAACAACGTGAAGATCTCAAAGCAGCCAAAGTATCACTCGGTGTGCTGGGAGTTATTTCACAGATTACTCTAAAACTAGAACCCCTCTTCAAGCGATCCATCACCTATTTGGTAAAAAATGATTCAGATTTGGGAGACCAAGTGGCTGCTTTTGGACATGCACATGAGTTTGCGGATATAACGTGGTACCCAAGTCAACGCAAGGCTGTCTACCGTGTTGATGATCGTGTCCCAATCAATACATCGGGCAATGGTCTTTACGACTTTATCCCTTTCCGTCCTACTCCTTCTCTTGAATTGGCTATCATAAGAACCACAGAGGATATTCAAGAATCCACTAGTGATGCCGATGGAAAGTGCTTAGGCGCTAAGACCACAACAAATACCCTCATCACCGCAGCATATGGGCTTACTAACAACGGCATAATCTTCACTGGATACCCTGTAATTGGATTTCAGAACCGCCTTCAGGCATCTGGGTCATGCTTGGATAGTTTTCAAGATGGAAAGCTTACAGCATGTGCCTGGGATTCCAGGGTGAAGGGAGAGTTCTTTCACCAAACCACGTTTAGCATTGGGTTGTccgttgtaaaaaaatttattgaagatgTGCAAAAGCTAGTTCAATTGGAGCCGAAGGGATTGTGTGGCATAGAGCTTTACAATGGAATTCTCATGCGCTATGTCACGGCTTCAAGTGCCTACTTGGGGAAGCAAGAGGATGCTTTAGACTTTGATATCACCTACTACCGTAGCAAGGACCCAATGACTCCTAGGCTTTATGAAGACATTCTTGAAGAGGTTGAACAACTTGGGATTTTCAAATATGGAGGGATACCTCATTGGGGTAAGAATAGGAACTTGGCGTTTGAAGGAGCCATCAAGAAGTACAAAAACTCAGACAAATTTTTGAGGGTTAAAGAGAAGTATGACTTACAAGGGCTTTTCTCAAGTACGTGGACGGACCAAGTGCTTGGGCTAAAAGATGGAGTGACAATACTGAAGGATGGGTGTGCATTAGAAGGTTTGTGCATTTGCTCACAGGACAGTCATTGCAATCCAAGCAAAGGTTACTATTGCAGACCAGGCAAAGTTTACAAGGAAGCAAGGGTTTGTACTCATTTGAAATCCAAATGA 1764 0.4388 MLLLCSKRMSNKAFVSTLVFLFFSVVVLSTPPEDPIRCSSKNTTCTITNSYGIFPDRSICQASQVLYPTTEEELVSVVASATKNKTKMKVATRFSHSIPKLVCPEGQNGLLISTKYLNQILKVDVEARTVKVESGVTMKQLINEAAKVGLALPYAPYWWGLTIGGLMGTGAHGSTLWGKGSSVHDYVVELRIVSPAGPEDGYAKVESLNEQREDLKAAKVSLGVLGVISQITLKLEPLFKRSITYLVKNDSDLGDQVAAFGHAHEFADITWYPSQRKAVYRVDDRVPINTSGNGLYDFIPFRPTPSLELAIIRTTEDIQESTSDADGKCLGAKTTTNTLITAAYGLTNNGIIFTGYPVIGFQNRLQASGSCLDSFQDGKLTACAWDSRVKGEFFHQTTFSIGLSVVKKFIEDVQKLVQLEPKGLCGIELYNGILMRYVTASSAYLGKQEDALDFDITYYRSKDPMTPRLYEDILEEVEQLGIFKYGGIPHWGKNRNLAFEGAIKKYKNSDKFLRVKEKYDLQGLFSSTWTDQVLGLKDGVTILKDGCALEGLCICSQDSHCNPSKGYYCRPGKVYKEARVCTHLKSK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3007 587 Gene3D - 119 237 IPR016169 -
Ssu4g3007 587 SUPERFAMILY FAD-binding/transporter-associated domain-like 56 237 IPR036318 GO:0050660
Ssu4g3007 587 PANTHER D-ARABINONO-1,4-LACTONE OXIDASE-LIKE PROTEIN 10 584 - -
Ssu4g3007 587 Pfam FAD binding domain 63 197 IPR006094 GO:0050660
Ssu4g3007 587 Pfam D-arabinono-1,4-lactone oxidase 396 532 IPR007173 GO:0003885|GO:0016020
Ssu4g3007 587 Gene3D - 396 496 - -
Ssu4g3007 587 PANTHER GULONOLACTONE OXIDASE 10 584 - -
Ssu4g3007 587 ProSiteProfiles PCMH-type FAD-binding domain profile. 58 238 IPR016166 GO:0071949
Ssu4g3007 587 TIGRFAM pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase 31 582 IPR010030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3007 Ssu-Chr4 76856552 76862782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3007 K00103 - gmx:100790483 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3007 4 76856552 76862782 Ssu4g3007 4 76856552 76862782 ECH