Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3002 ATGCAGCAGACACCGTCAATGATTCCTATGATGCCCTCATTCCCACCTACAAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCGGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAACTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCTATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAATGGCTCAGCAGCAAGGAATGTTCCCCCAAAAAATGCCATTGCAATTTGGTAATCCACATCAAATGCAGGATCAGCAGCAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGGATGAATAATGGCATGCATCCAATGCACAGCGAGGCTGCTCTCGGAGGTGGCAACAGCGGTGGTCCACCATCGGCTACTGGTCCAAATGATGCTCGCGGTGGAAGCAAGCAAGATGCTTCTGAGgctgggacagctggtggagacGGCACGGCTGCACACAACAGCGGAGATGGTGAATCTTCTTATCTGAAGGGGTCAGAAGAGGCAAAGTGA 645 0.4791 MQQTPSMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAMAQQQGMFPQKMPLQFGNPHQMQDQQQQLHQQAIQGQMGLRPGGMNNGMHPMHSEAALGGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGTAAHNSGDGESSYLKGSEEAK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3002 214 MobiDBLite consensus disorder prediction 120 214 - -
Ssu4g3002 214 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 1 183 IPR044779 GO:0003713
Ssu4g3002 214 MobiDBLite consensus disorder prediction 120 135 - -
Ssu4g3002 214 PANTHER BNAA09G51550D PROTEIN 1 183 - -
Ssu4g3002 214 Pfam SSXT protein (N-terminal region) 18 74 IPR007726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3002 Ssu-Chr4 76731756 76735292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3002 - - vun:114167142 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3002 4 76731756 76735292 Ssu4g3002 4 76731756 76735292 ECH