Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2984 ATGAGGCAAGTGAAGCAAATCCATGGTTACACTCTAAGAAATGGCATAGACCACACCAAAATCCTCATTGAGAAGCTACTTGAAATCCCCAACCTTCACTATGCACACATGGTGTTGCACCATTCCCCAAAGCCAACCCTTTTCCTCTACAACAAGCTCATTCAAGCCTACTCCTCCCATGCCCAAAACCAATGCTTCTCCCTCTACTCCCAAATGCGCCTTCATGGCTTCCCACCAAACCAACACACTTTCAACTTCCTCTTCTCTGCATGCACCTCCCTCTCTTCCCCTTCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCAGCCACTGCTTTGCTTGATATGTATGCCAAAGTGGGTACTTTGGAGCTGGCACGCCAACTGTTTGATGAAATGCCTGTGAGAGGGGTACCTACATGGAATGCTATGATGGCTGGATGTGCAAGATTTGGTGATATCGAGGGAGCATTGGAACTGTTTAAGTTTATGCCTTCCAGGAATGTGGTGTCATGGACCACCATGATATCTGGTTACTCGCAGAACAAACAGTATGGGGAGGCTTTGGGCCTGTTCCTGAGGATGGAGCAGGAGAAAGACGTAATGCCCAATGAAGTAACCTTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGAGCACTGGAGATTGGGCAGAGGGTTGAAGCATACGCAAGGAAGAATGGGTTCTTTAAGAATTTATATGTAAGCAATGCTGTGTTGGAGATGTATGCAAACTGTGGTAAGATTGATGTTGCTTGGCGGGTGTTCAATGAGATCGGCAGGTTGAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTTGCTGTCCATGGACAATGTTGCAAGGCCCTTGAGCTTTATGATCAAATGCTGGGAGAAGGAACTTCACCTGATGATGTGACATTTGTGGGGCTCCTCTTGGCATGCACTCATGGAGGCATGGTTGAAGAGGGCAGGCATATCTTCAAGTCAATGACCACATCCTTCCATATTATTCCCAAACTAGAACACTATGGATGCATGGTTGATCTCCTAGGCCGTGCTGGGCAATTGAGAGAAGCTTATGAGGTAATACAAAGTATGCCCATGAAACCAGACTCAGTAATATGGGGGGCTCTATTGGGAGCTTGCAGCTTCCATGGTAATGTTGAGCTGGCTGAGATTGCAGCTGTGTCTCTATTTGTGCTTGAGCCTTGGAATCCAGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCTGGGCAATGGAATGGAGTTGCAAAGCTCAGGAAAGTGATGAAGGGCAGCCAGATTACAAAGTCAGCTGGACATAGTTTCATTGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAAGATAGTTCACATCCTAAAAGCAACGAAATTTTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTGAATAGAAGTGCATTTGAATGTCATTTCGATCTTGATTTGAGGACCTAA 1527 0.4538 MRQVKQIHGYTLRNGIDHTKILIEKLLEIPNLHYAHMVLHHSPKPTLFLYNKLIQAYSSHAQNQCFSLYSQMRLHGFPPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGTLELARQLFDEMPVRGVPTWNAMMAGCARFGDIEGALELFKFMPSRNVVSWTTMISGYSQNKQYGEALGLFLRMEQEKDVMPNEVTLASILPACANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYANCGKIDVAWRVFNEIGRLRNLCSWNSMIMGFAVHGQCCKALELYDQMLGEGTSPDDVTFVGLLLACTHGGMVEEGRHIFKSMTTSFHIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMPMKPDSVIWGALLGACSFHGNVELAEIAAVSLFVLEPWNPGNYVILSNIYASAGQWNGVAKLRKVMKGSQITKSAGHSFIEEGGQLHKFIVEDSSHPKSNEIFALLDGVYEMIKLNRSAFECHFDLDLRT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2984 508 Gene3D Tetratricopeptide repeat domain 31 147 IPR011990 GO:0005515
Ssu4g2984 508 Gene3D Tetratricopeptide repeat domain 283 479 IPR011990 GO:0005515
Ssu4g2984 508 Gene3D Tetratricopeptide repeat domain 148 244 IPR011990 GO:0005515
Ssu4g2984 508 Pfam PPR repeat 120 147 IPR002885 -
Ssu4g2984 508 Pfam PPR repeat 354 379 IPR002885 -
Ssu4g2984 508 Pfam PPR repeat 253 275 IPR002885 -
Ssu4g2984 508 Pfam E motif 397 459 IPR046848 -
Ssu4g2984 508 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Ssu4g2984 508 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 459 - -
Ssu4g2984 508 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Ssu4g2984 508 Pfam PPR repeat family 45 91 IPR002885 -
Ssu4g2984 508 Pfam PPR repeat family 176 225 IPR002885 -
Ssu4g2984 508 Pfam PPR repeat family 280 326 IPR002885 -
Ssu4g2984 508 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Ssu4g2984 508 TIGRFAM PPR: pentatricopeptide repeat domain 149 178 IPR002885 -
Ssu4g2984 508 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Ssu4g2984 508 PANTHER OS06G0125600 PROTEIN 2 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2984 Ssu-Chr4 76188659 76190614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2984 5 492 Glycoside Hydrolase AT3G49170 33.871 1.08e-92 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2984 - - gmx:100790321 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2984 4 76188659 76190614 Ssu4g2984 4 76188659 76190614 ECH