Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2971 ATGCCACCCCAAACGCAGCCCTTCGGCGTTTTCCTCGCCGGCGGCGGCGGAGACCCACTGCCGGCGGCGAGGCGAACCGTGAAGAAAACGCTAATAGTGGAAGACTCCTCCCTGGACAACCCGGATCTGGGCCCGTTTCTTCTGAAGATGGCCCGAGAAACCATAGCGTTGGGTGAGAGCCCGGTAAAGGCCCTGGACTTCGCCATTCGGGCCTCCAAGTCGTTCGAGCGGTGTACGGGCCCGGGCCTCGAGCTTGCCACGTGTCTCCACGTGGTTGCCGCGATCTACAGCAGTTTGGGGCGGTTGGACGAGGCGGTTGAGGCCTTGGAGCGGTCCATTTTGTTGTTGGAAGGCGAAAACGGGTCGGGCCATGCCATGGCCCAATTTTCCGGGTACATGCAACTTGGGGACACTTATTCCATGATTGGACAGTTGGATAGGTCCATTGCGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTTCTGGGTGAGTCCGACCCGAGAGTTGCGGAGACTTGTAGGTACCTAGCTGAAGCTCATGTTCAAGCCATGCAATTTGACCAGGCAGAGAACTTCTGCAAGAAGACCCTCGAAATTCATAGGGAGCATTGCTCACCTGCTTCCCTTACCGAAGCAGCCGACAGGCGTCTAATGGCCCTTATATGTGAGGCAAAGGGAGATTATGAACCAGCACTTGAGCACCTTGTCCTAGCTAGCATGTCGATGATCGCGAATGCACAAGACAATGAGGTTGCAGCTATTGATGTTAGCATTGGAGATATTTACTTGTCACTTTGTCGTTTTGACGAGGCTGTTTTCGCCTATCAGAAAGCACTAACAGTGTTCAAATCCACTAAAGGTGAAAGCCACAGTTCCGTGGCATTAGTGTACATTCGCCTCGCTGACCTTTACTACAGGACAGGAAAATTAAGAGAGTCAAAATCCTATTGTGAAAATGCCTTGAGAATATACAGTAAGTCTGTGGCTGGAACAACCGCCGGGGAGATTGCGAGTGGATTGACTGAAATCTCTGCCATCTACGAAGCTCTAAATGAGCCGGAGGATGCGCTGAAGCTGTTGCAGAAAGCAGTGAAATTGTTGGAGGATATCCCTGGAAAATATAGGACAGTAGCAGGAATTGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAGGTATATGGATGCTTGGAAATCTTTTGAGAATGCTATCACCAAGCTGAGAGCAAGTGGGGAGAAGAAATCTGCCTTTTTTGGAGTTGTATTGAACCAGATGGGGCTAGCATGTGTGCAACTGTATAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCAAGAGAGATATTGGAGAGAGAGTGTGGAACATATCATTCGGACACTCTTGGGGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGAGATATTGGAATACATACTAAagatgagagaagaaaaactcGGAACTGCAAATCCAGATGTTGATGATGAAAAGAAACGGCTATTTGAGCTTTTGAAAGAAACAGGAAGAGTTCGGaatagaaagggaaaaaaatcacTTGAAAACCTTATAGATTCCAATTCCTTAAAGATgaagaaggaaggaaaaaagagaTGGGCTGCTTTTGGTTTGAGAACTTAA 1671 0.4686 MPPQTQPFGVFLAGGGGDPLPAARRTVKKTLIVEDSSLDNPDLGPFLLKMARETIALGESPVKALDFAIRASKSFERCTGPGLELATCLHVVAAIYSSLGRLDEAVEALERSILLLEGENGSGHAMAQFSGYMQLGDTYSMIGQLDRSIACYESGLKIQMDVLGESDPRVAETCRYLAEAHVQAMQFDQAENFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANAQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVYIRLADLYYRTGKLRESKSYCENALRIYSKSVAGTTAGEIASGLTEISAIYEALNEPEDALKLLQKAVKLLEDIPGKYRTVAGIEAQMGVMFYMVGRYMDAWKSFENAITKLRASGEKKSAFFGVVLNQMGLACVQLYKIGDAAKHFEEAREILERECGTYHSDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKETGRVRNRKGKKSLENLIDSNSLKMKKEGKKRWAAFGLRT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2971 556 SUPERFAMILY TPR-like 132 493 IPR011990 GO:0005515
Ssu4g2971 556 SUPERFAMILY TPR-like 218 328 IPR011990 GO:0005515
Ssu4g2971 556 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Ssu4g2971 556 ProSiteProfiles TPR repeat profile. 463 496 IPR019734 GO:0005515
Ssu4g2971 556 Coils Coil 99 119 - -
Ssu4g2971 556 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 30 556 - -
Ssu4g2971 556 SUPERFAMILY TPR-like 383 519 IPR011990 GO:0005515
Ssu4g2971 556 Pfam MalT-like TPR region 90 239 IPR041617 -
Ssu4g2971 556 Pfam Tetratricopeptide repeat 423 495 - -
Ssu4g2971 556 Pfam Tetratricopeptide repeat 252 326 - -
Ssu4g2971 556 Gene3D Tetratricopeptide repeat domain 239 414 IPR011990 GO:0005515
Ssu4g2971 556 Gene3D Tetratricopeptide repeat domain 415 548 IPR011990 GO:0005515
Ssu4g2971 556 Gene3D Tetratricopeptide repeat domain 83 238 IPR011990 GO:0005515
Ssu4g2971 556 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 30 556 - -
Ssu4g2971 556 SMART tpr_5 171 204 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 421 454 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 86 119 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 463 496 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 129 162 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 295 328 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 379 412 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 338 371 IPR019734 GO:0005515
Ssu4g2971 556 SMART tpr_5 253 286 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2971 Ssu-Chr4 75924070 75931205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2971 92 298 Glycosyltransferase AT3G04240 24.312 2.65e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2971 - - gmx:100794697 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2971 4 75924070 75931205 Ssu4g2971 4 75924070 75931205 ECH