Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2968 atgaagGACAATAACCTTTCCAGTAGCTTGTTTCTGGCCAAGGAACAATTAAAATCTGAACTTCTTACCAAGGTTGGTTTATGGAGCATCTTAGAAGTAGCTGAGTTAATTAGTGGATCATTGCCTACTTATCACCCTGATGTACTACTTACTAATATCAGTTCAGGAAACTGGAAACGTGCTTATGTAGCTGTGAGGCATCTTGTTGAATGCCTGACTTCTAATTATGATCCTAAAAAGAGACACATCTCCAAAAGAATTGGTCTTCCAAATATTGCATTGTCATATTATCTAGAAGGCTGTATATCAAAAGGTTCCCAAAATAAGGGATTCCAATGGAGTGGGGATGCTGCTTCAATGACATCAATTTCACAGGCTCAGAGTACCTTGTTCCAGTTTCCATATCATTCAGGTTCCAGTGCTGAAAATGGAAGCATTTCCTCCTCAACAAAATCTGAGCTTAATGGCTTTATTGAATCTCTTGAGAAATTGGCTGATGTACCACTTTTGATTGACACAGAGAAGACACAGATTCTTGCAATTATAGATCTGCTTAGTGAAGTTAGTAGTGCACACTCATCTTCTGCATATCAGAGTCTTGATGAACCTGGGCGAAGGTTTTGGGTTGCACTAAGGTTTCGGCAACTGCTTTTTCTCCGAAAGTTTGCTAGAGCTGCATCTTTCAAAGAGTTGCTTGTTAACTCAAGGTTGTTTGTATGGGCTTACCACTCTGATTGCCTAGATAATTTATTTGGTTCTGTCATACCCAATGAACCATCATGGCAAGAAATGCGTGCTTTGGGTATGGGCTTTTGGTATGCTAATATACCTCAATTGCGTGCAAGGATGGAGAAATTGGCAAGAGCTCAGTATTTGAGGAACAAAAATCCTAAGGATTGTGCTTTGCTGTACATTGCACTGAATAGAATTCAAGTTTTGGCTAGCCTTTTCAAAATCAGTAAGGATGAGAAGGATAAGCCTCTAGTGGGCTTTCTTTCACGCAATTTTCAGGACGAGAAAAATAAAGCTGCTGCTTTAAAAAATGCTTATGTCTTACTGGGAAAGCATCAACTGGAATTAGCAATTGCTTTCTTTTTGCTTGGAGGTGATCATTCTTCTGCTATAAATATTTGCGCTAAGAATCTTGGGGATGAACAGCTTGCCCTAGTCATTTGTCGTCTTGTTGAGGGCCATGGTGGGCCATTGGAGCATCACCTAATTACAAAGTACATACTTCCATCTGCAATTGATAAAGGAGACTACTGGCTTGCAAGCATTCTGGAGTGGGAAATGGGTAATTACTATCAATCTTTTTATAGAATGCTAGAGTTTTCCGTAAACCCTTTGCCTCAGGAGTCCACTGTCATGTCCAATTGTGGTCCTTTTCTGGACCCTACTGTTGGTTTTTATTGCCAAATGTTAGCAACAAAGAATAGCATGCGGAATGTTGTGGGGGAGCAAAATTCTGCAATCCTTTTAAGATGGGCAACTTTGATGACAGTTACTGCCCTAAAAAGATGTGGTAATCCTCTTGAGGCGTTGGAGTATTTTTCATCTTCACTGAGCATGCTTGGGACTGCAGATCAAGAGAGTGAATTAGGTGACAGTCATGATGTGCTGTCCAGTACTCTTAAGCCTTTGCCAAGAAAATGCTCTAACTGGTTGTCTGCTAATGTGTCTGTGCATCTGGAGTTccatattaaattgaatttggcACTTTGCTACTTATCAAAATTGATAAGAGAGCATCCAAGCTGGCCTGACTCTTTTGCAGAATATAGTGGAGAAGCTTCTCATTCTGATGAGTTCATGATGCAATATGAGAAATcagttgaaagttttaaacaaaagttataCACAGGGCTTGCTCTATTTGAACAGAGGTTTTTATTGGCTCCACACTGTATAATCAGTATGATTTTACTCTTACTTTGCCATCATGGATCATTGTACATTGTATATGATATGACAGATGGATGCACACAAGGAGAACTGTCTCAAAAGAATAGCAATATATTTGatgatttcaatttatattactCTCGGATTAAACCCCTCTTTAAGACTGCAGAAGAAGTCTCCTTTTtatattcaagatttttttgtGCCTGCAGTATGGAATATTCTCAACAAAGTTCATCTATTGAGGGTAAACCTAAGTTTTTGGGTGCTATGCAGTGCCGCTTTGAAGGTGTTTTGGTTTCATTGTCATATTTAAGAGCAATTTTGAGGATCCAGTTGAGTTCTATTAGCAAAGATCTCATCGAAACACATCTTGGTATCCTGGATTTTTATGagtattatttacatttttcattagCTTGGCTTCAAAGAAACTTGAAAGCCCTTTTGTATATGGTGGAACCATTCTTGGTTGCACGATCTAGTGGCCGTAATCCTTATGACGTTGATATGGTGAATCTGAAGAAGCTTATCCCAAAAATTGGACAATTGTTGGCTCAAACTTCTTTCATACCTAATATACAAAACCTTCAACTATCCGAACGTGCAGAAGATAAACTAGTTGCAAATATAAAGCATTCAATTCCTGATGATGAAAGATGGAAGATTTTAGGGACCTGCTTGTGGCAGCATATGTCTAGATTCATGATATCTAATTTGAATCCGGTTCTTGCCAAACTTGAAGATGGTAATTTGTCTGGTCCTTTCCACAGAAAATATACTTATGGGGAGGCTTATCTCATAAATATGGATTCTGAAAGCATCAGCTTGCCAGAGAAGATTCAGTTAGTCTCGTTGAGCCTATGTGATCTACTGATGACAACAGTTACTCACATTTCTTCTTATCATGTTAAACAACATGCCGAATTTCTGTGGCAGAAAGTAGAGAATGGTTTGAATGTGACAACTCTTGAATGgttaaaacaaaaatcagaATTCAGTCAGAACCAAAACCTGGACATTTTGGAACTGGGGAACAGGAAAGATAGCTATTCAGTTCATCAGTCATTGTGGGATCACTGTGCGGATCCCAAATTGATATCTGATTGCTTTGTTCAGGAAAAACTCAATTGGCCAAATGATTTGGATCATATGCATACTAAAGGATGGAATGACCTGTCTATAATTATGACAGGACTGCATAAAACTGATGATACATGTGGTGATGACTGTAAACTTAGCACTAGATCTTCTAATCATGAAGTTGGAACTCCTGTTAAAGGAATGTCTCTAAGTGGTCATGCTTCTGCAAGATCAAACCAGAAAGATATAACTAATACAAACTTTGCACTTTTCCAGAGTTCGAGAGAAATGTATAAGAGAAATGGAGAACTTTTGGAGGCATTGTGTATAAACTCTACTGACCAACGGGAAGCTGCAGTTGCTAGCAACCGGAAGGGTATAATGTTCTTTCATCTAGAAGATGAGATTCCTTTTAGTAGCAAATCAGATAATCTTTTGTGGGCCAAGGCTGATTGGCCTCATAATGGATGGGCAGGTTCAGAATCCACCCCTGCTCCAACATGTGTTTCTTCTGGTGTTGGCCTTGGGAGCAAGAAAGGGGCACACCTTGGGCTGGATGGAGCAACTGTTGGTGTGGGCTCTTCAGCTTGGCCAAGCAATGACTTGACAGGTGGTGGAGTATTAGGAATGCTAGGTTATGCTGGTATTGGTGCCTCTGGATTAGGTTGGGAAATTCAACAAGATTTTGAAGATTTTGTTGATCCACCTGCCACTTTGGAGAACATAAGTACCAGGGCTTTGTCTAGTCATCCAATGAGGCCTTTCTTCTTGGTTGGTTCTAGCAATACACACATTTACTTGTGGGAGgTGGCCAACTGTCCAATTGTTTCTCTTAAGTTTGCATGTTTACTGTTCAAGCTTCATGCACAATTTCGCATACAATTCTTGTCACTAGAGAGGAGGATGTCATTTGAACCAATgCTTTACAGTTTGACCACTTTGGACACCGTTTTGCCAGTGCTGCAGTTAGATGGAACTGTCTGCACATGGCAGCTGGAGGTTGGAGGAAGGAGCAATGTTCGTCCAACAGAATCATCTCTCTgctttaatggtcatgcatcGGATGtcacatatttttcttcaagtgGATCAATAATAGCTGTGGCTGGATATAGCTCTAATGGTGTTAATGTGGTCATATGGGATACTTTAGCTCCACCCACTACTTCTCGAGCTTCCATTTTATGTCATGAAGGTGGTGCACACACTGTGTCTGTTTTTGATAATCATGTGGGAAGTGGTTCTGTATCCCCCCTTATTGTGACTGGTGGTAAAGGTGGTGATGTTGGAATTCATGACTTCCGCTATATAGCTACTGGAAAGGCTAAAAGACACAGGCGTGCTGATAACATTGGGCAAAGCTCTACCTCATCTTTGACTCGTGACAAGGACCAGAATGTAGATGGGATGCTTTGGTACATTCCAAAAGCTCACTCAGGGAGTGTCACAAAAGTAGTTACCATCCCAAATACCAGCTTGTTTTTAACTGGAAGCACAGATGGAGATGTCAAACTCTGGGATGCCCAGAGGACAAAGTTAATACATCACTGGTCAAAGATACATGAAAAGCACACCTTTCTGCAGCCAAGCTCTCGTGGATTTAGTGGTGTTGTTCggGCTGCTGTTACAGATATACAAGTTGTTTCCCATGGTTTTCTCACATGCGGTGGGGATGGAACTGTAAAGCTGGTACGGCTGGACAGTCACCTGCATGGGCATGGAATTGAGTTATGA 4719 0.3933 MKDNNLSSSLFLAKEQLKSELLTKVGLWSILEVAELISGSLPTYHPDVLLTNISSGNWKRAYVAVRHLVECLTSNYDPKKRHISKRIGLPNIALSYYLEGCISKGSQNKGFQWSGDAASMTSISQAQSTLFQFPYHSGSSAENGSISSSTKSELNGFIESLEKLADVPLLIDTEKTQILAIIDLLSEVSSAHSSSAYQSLDEPGRRFWVALRFRQLLFLRKFARAASFKELLVNSRLFVWAYHSDCLDNLFGSVIPNEPSWQEMRALGMGFWYANIPQLRARMEKLARAQYLRNKNPKDCALLYIALNRIQVLASLFKISKDEKDKPLVGFLSRNFQDEKNKAAALKNAYVLLGKHQLELAIAFFLLGGDHSSAINICAKNLGDEQLALVICRLVEGHGGPLEHHLITKYILPSAIDKGDYWLASILEWEMGNYYQSFYRMLEFSVNPLPQESTVMSNCGPFLDPTVGFYCQMLATKNSMRNVVGEQNSAILLRWATLMTVTALKRCGNPLEALEYFSSSLSMLGTADQESELGDSHDVLSSTLKPLPRKCSNWLSANVSVHLEFHIKLNLALCYLSKLIREHPSWPDSFAEYSGEASHSDEFMMQYEKSVESFKQKLYTGLALFEQRFLLAPHCIISMILLLLCHHGSLYIVYDMTDGCTQGELSQKNSNIFDDFNLYYSRIKPLFKTAEEVSFLYSRFFCACSMEYSQQSSSIEGKPKFLGAMQCRFEGVLVSLSYLRAILRIQLSSISKDLIETHLGILDFYEYYLHFSLAWLQRNLKALLYMVEPFLVARSSGRNPYDVDMVNLKKLIPKIGQLLAQTSFIPNIQNLQLSERAEDKLVANIKHSIPDDERWKILGTCLWQHMSRFMISNLNPVLAKLEDGNLSGPFHRKYTYGEAYLINMDSESISLPEKIQLVSLSLCDLLMTTVTHISSYHVKQHAEFLWQKVENGLNVTTLEWLKQKSEFSQNQNLDILELGNRKDSYSVHQSLWDHCADPKLISDCFVQEKLNWPNDLDHMHTKGWNDLSIIMTGLHKTDDTCGDDCKLSTRSSNHEVGTPVKGMSLSGHASARSNQKDITNTNFALFQSSREMYKRNGELLEALCINSTDQREAAVASNRKGIMFFHLEDEIPFSSKSDNLLWAKADWPHNGWAGSESTPAPTCVSSGVGLGSKKGAHLGLDGATVGVGSSAWPSNDLTGGGVLGMLGYAGIGASGLGWEIQQDFEDFVDPPATLENISTRALSSHPMRPFFLVGSSNTHIYLWEVANCPIVSLKFACLLFKLHAQFRIQFLSLERRMSFEPMLYSLTTLDTVLPVLQLDGTVCTWQLEVGGRSNVRPTESSLCFNGHASDVTYFSSSGSIIAVAGYSSNGVNVVIWDTLAPPTTSRASILCHEGGAHTVSVFDNHVGSGSVSPLIVTGGKGGDVGIHDFRYIATGKAKRHRRADNIGQSSTSSLTRDKDQNVDGMLWYIPKAHSGSVTKVVTIPNTSLFLTGSTDGDVKLWDAQRTKLIHHWSKIHEKHTFLQPSSRGFSGVVRAAVTDIQVVSHGFLTCGGDGTVKLVRLDSHLHGHGIEL 1572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2968 1572 Gene3D - 1236 1451 IPR015943 GO:0005515
Ssu4g2968 1572 Pfam WD domain, G-beta repeat 1470 1502 IPR001680 GO:0005515
Ssu4g2968 1572 SUPERFAMILY WD40 repeat-like 1240 1558 IPR036322 GO:0005515
Ssu4g2968 1572 PANTHER RABCONNECTIN-RELATED 24 1561 - -
Ssu4g2968 1572 ProSiteProfiles Trp-Asp (WD) repeats profile. 1470 1511 IPR001680 GO:0005515
Ssu4g2968 1572 Pfam RAVE protein 1 C terminal 20 437 IPR022033 -
Ssu4g2968 1572 Gene3D - 1467 1568 IPR015943 GO:0005515
Ssu4g2968 1572 PANTHER RABCONNECTIN-3A 24 1561 - -
Ssu4g2968 1572 SMART WD40_4 1337 1377 IPR001680 GO:0005515
Ssu4g2968 1572 SMART WD40_4 1463 1502 IPR001680 GO:0005515
Ssu4g2968 1572 SMART WD40_4 1382 1428 IPR001680 GO:0005515
Ssu4g2968 1572 SMART WD40_4 1514 1560 IPR001680 GO:0005515
Ssu4g2968 1572 SMART WD40_4 1227 1264 IPR001680 GO:0005515
Ssu4g2968 1572 MobiDBLite consensus disorder prediction 1052 1073 - -
Ssu4g2968 1572 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1470 1502 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2968 K24155 - gmx:100789935 2741.84