Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2953 ATGTCCCTCCTCACTCGCCTTACCCGCCAAAATTCATCCACCGCCACGCCCCTCACGCGCCGCCTCTCCTCCGCCGCCTCTAAACTCCACACCTGCTACACTTTCAAACCACCGTCTTCTCTCACTCCCGAACCCCAATGGCCCGCTTCCTCTCCCACCAAGCCCAACCAAAAAAAGCCCAAGCCCAAGTACCGCCCTCCGTCCTCCCTCGACCGGAGCGGCCGCAAACCAGTCCGTTCCGACGACCTGCCCTTCGATATCCGGTTCAGCTACACGGAGAGCAGCCCCACGGTGCGGCCCATCGGGCTGAGGGAGCCCAAGTACTCGCCCTTTGGACCGGGCCGGCTCGACCGGAAGTGGACCGGAGTGTGTGCCCCGGCGGTGGACCCGAAGGTGGAGAGCTTGGAGGGTGCGGAGGACCCTAAGTTGGAGGAgcggaggaagaagaagagagagatgattCAAGGAAAACCGCTTACCAGTGATGAGAGGAAGGCGCTGGTTTCGCAATGTGAGAGAAGCAAAACTAATAGGCACATCAATATCGGGAGGGATGGTTTAACTCACAACATGCTGAATGATATTCATAATCATTGGAAATTTGCTGAAGCAGTAAGAATCAAATGCATGGGTGTTCCAACTATggacatgaaaaatatttgtaccCAGCTTGAGGACAAAACATTTGGAAAGGTCATTTTCAGACATGGGGGTACACTTGTATTATACAGAGGCAGGAATTATAATCCGAAAAAGAGGCCTGCAATTCCTCTCATGTTGTGGAAACCCCATGAACCTGTATATCCTAGACTGATTAAGACAACAATTGATGGCTTAAGTATTCAGGAAACAAAAGAAATGCGGAAGAGAGGACTAGCTGTTCCTGCTTTAACAAAACTTGGTATGTGCattgtattttctaatttcagTTGCCAGTATGCTTTTGCAAACATTATTGACTCTGAAGTGAATTGCagccaaaatggttattacacTTTTTTGGTACCCATGGTCAGAGATGCTTTCCTCTCCTGTGAATTGGTTCGGATAGACTGCCAGGGGCTTGAGAGGAAAGATTACAAGAAAATAGGCTGCAAGCTCAGGCCAATCAACGTCTCTAAGGATGCCATCTATGAGCACTAA 1143 0.4698 MSLLTRLTRQNSSTATPLTRRLSSAASKLHTCYTFKPPSSLTPEPQWPASSPTKPNQKKPKPKYRPPSSLDRSGRKPVRSDDLPFDIRFSYTESSPTVRPIGLREPKYSPFGPGRLDRKWTGVCAPAVDPKVESLEGAEDPKLEERRKKKREMIQGKPLTSDERKALVSQCERSKTNRHINIGRDGLTHNMLNDIHNHWKFAEAVRIKCMGVPTMDMKNICTQLEDKTFGKVIFRHGGTLVLYRGRNYNPKKRPAIPLMLWKPHEPVYPRLIKTTIDGLSIQETKEMRKRGLAVPALTKLGMCIVFSNFSCQYAFANIIDSEVNCSQNGYYTFLVPMVRDAFLSCELVRIDCQGLERKDYKKIGCKLRPINVSKDAIYEH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2953 380 PANTHER CRS2-ASSOCIATED FACTOR 1, MITOCHONDRIAL 6 369 - -
Ssu4g2953 380 SUPERFAMILY YhbY-like 158 254 IPR035920 -
Ssu4g2953 380 MobiDBLite consensus disorder prediction 36 84 - -
Ssu4g2953 380 MobiDBLite consensus disorder prediction 134 162 - -
Ssu4g2953 380 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g2953 380 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 6 369 IPR044599 GO:0000373
Ssu4g2953 380 SMART CRS1_YhbY_2 159 244 IPR001890 GO:0003723
Ssu4g2953 380 Pfam CRS1 / YhbY (CRM) domain 159 244 IPR001890 GO:0003723
Ssu4g2953 380 Gene3D - 158 255 IPR035920 -
Ssu4g2953 380 MobiDBLite consensus disorder prediction 134 159 - -
Ssu4g2953 380 ProSiteProfiles CRM domain profile. 157 255 IPR001890 GO:0003723
Ssu4g2953 380 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2953 Ssu-Chr4 75547368 75551430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2953 - - gmx:100789954 578.556