Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2933 ATGAAGAACTTGCAGAGCTCGGAAGAATTACAGTCATCAACTCAAGCTTCTCATGAGCCCAAGAGTGAACCACTAAACAATACAACTGATGCTCCTGTTACAGACACAGGTTCAGCATCTGCTTCAAGTAATGACAGCAAAAAGGTTTCACGGCAGGATATTGAGTTTGTCCAGAATTTAATAGAAAGATGCCTACagttatatatgaataaagatGAAGTGGTTAAAACACTACTGACTCGGGCAAAGATAGATCCTGGATTCACAACTCTTGTATGGCAGAAGTTGGAAGAAGAGAATGCCGATTTCTTCAGGGCCTACTATATCAggctaaaattgaaaaagcaaataCTTTTATTCAATCATTTACTTGAGCATCAGTATCATTTGATGAAGTGTCCCATGCCTACAAAGGTTCCATTAGCTCCAATACAGAATGGAATCCATCCAATGCCTGTCAACAACCTACCTATGGGATACCCAGTGCTACAACAGCCTTCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTATATCAAGTTGTCATGTAGTTAATGGAGTCCCTGCCCCAGGCAACTTTCACCCCATTCGCATGAATTCTGGGAATGATATGGTGATGGACCACAGCGCCCCTGATATGGCTCCTGTTCTTCCACCAAATGGCACGATGTCATCCGTCTCAGAAATGCCAGTAAGTCCGACATCAGTAGCATCCAGTGGTCATTTCCCCTTCACTGCATCAGAAATATCTGGAATGGGCGCAGATGCATCAGCTCTTGATACAGCATTTACGTCTGATGTGGCAAGTTCAGTAGGACTACAGCTTGCACCGGATGGTGGCAATGGAATTTCCAGATCGCTGGATCAAATTCAATGGAATTTTAGCCTATCTGATCTAACAGCAGATTTGCCAAACTTGGGAGATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCCGATTCAGACATTTTGCTTGAATCTCCTGATCAACAGGATATAGGTAAtgttaaatacatatatatcttatttttaaatgtccTAAATTTTAATACCATTAATGAATAA 1092 0.4029 MKNLQSSEELQSSTQASHEPKSEPLNNTTDAPVTDTGSASASSNDSKKVSRQDIEFVQNLIERCLQLYMNKDEVVKTLLTRAKIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYHLMKCPMPTKVPLAPIQNGIHPMPVNNLPMGYPVLQQPSMPATGQPHIDSMGCGISSCHVVNGVPAPGNFHPIRMNSGNDMVMDHSAPDMAPVLPPNGTMSSVSEMPVSPTSVASSGHFPFTASEISGMGADASALDTAFTSDVASSVGLQLAPDGGNGISRSLDQIQWNFSLSDLTADLPNLGDLGALGNYPGSPFLPSDSDILLESPDQQDIGNVKYIYILFLNVLNFNTINE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2933 363 MobiDBLite consensus disorder prediction 1 48 - -
Ssu4g2933 363 PANTHER OS02G0137100 PROTEIN 1 344 IPR006476 -
Ssu4g2933 363 PANTHER HELICASE WITH ZINC FINGER PROTEIN 1 344 - -
Ssu4g2933 363 MobiDBLite consensus disorder prediction 1 47 - -
Ssu4g2933 363 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 54 110 IPR006476 -
Ssu4g2933 363 Pfam Plant protein 1589 of unknown function (A_thal_3526) 57 108 IPR006476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2933 Ssu-Chr4 74800353 74811411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2933 - - gmx:100809603 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2933 4 74800353 74811411 Ssu4g2933 4 74800353 74811411 ECH