Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2925 ATGACATTTTGCATCTCCTTTCAGTACCATAGTTTTATGGATAACCTAGGAGCACATTTTCATCATcttaattcttattttgttcAAAACCCACGAACCCTCTTGCCACCAAGAAGCCATTCACCCTCTTCAGTTTCTCTTGGAATGTCAGATACCCTGCTGGTTTCTTCCACTCAATCTTCCTCACCAAAGTTTTCTCCATTCTCTCACCTTTTGGATAACTTGGGTGAGACAAGGACTTTGAATTCTGTGAGGGAACTGCATGCCCAGATGATCAAAATGCCAAAAAAGGGGAACTTGGTTACAATGGATGGAAGCATGATGAGAAATTACTTGGAATTTGGGGACTTTGTGTCAGCAACAAAGGTATTCTTTGTGGGTTTTGCAAGGAATTACCTTCTATGGAACTCTTTTCTGGAGGAGTTTGCAAGTTTTGGAGGTGACTCACATGAGATTCTGGAGGTCTTCAAGGAATTGCATAATAAAGGAGTGGAATTTGACAGCATAGCTCTCACTGTTGTTCTGAAAATTTGCTTGGCTTTAATGGATTTGTGGTTTGGGATGGAAGTTCATGCCTGTTTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCTTTGATCAATCTCTATGAGAAGTGCTTGGGAATAGACAGGGCAAATCAAGTGTTTGATGAGACCCCACTACAAGAACAATTCTTGTGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAGGTGGGAGAATGCATTAGAACTGTGCCGTCAAATGCAATCAGCTTCTGCCAAAGCCACTGATGGCACCATTGTCAAGCTGCTGCAAGCATGTGGGAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTACGTTATAAGATTTGGAAGAGTGTCAAATACTGCAATTTGCAATTCTATAGTTAGCATGTACTCTAGGAACAATAGAGTTGAACTAGCTAGAGCAGTTTTTGATTCAATGGAGGATCATAACTTGTCATCTTGGAACTCAATAATTTCGAGTTATGCAGTCAATGGCCGTTTGAATGATGCCTGGGATATCTTCCAAGAAATGGAGTCTTCCGGCATCAAACCAGACATTATAACTTGGAATTCCCTTTTGTCTGGCCATCTTCTTCGGGGGTCATATGAAATGGTTCTCACCAATTTCCGGAGCCTGCAACACGCAGGCTTCAAGCCAGATTCATGTTCAATAACTAGTGCTCTACAAGCAGTTATTGAATTGGGTTGGTTTAATTTAGGGAAAGAAATCCATGGTTACATAATGAGAAGTAAGCTTGACTATGATGTCTATGTTTGTACTTCTTTGGTGGATATGTATATTAAGAATGATTGCTTAGATAAAGCTGAAGTAGTGTTCCATCatacaaagaacaaaaatatttgtgcTTGGAATTCATTGATATCAGGTTACACCTACAAGGGCTTGTTTAACAAAGCTGAAAAACTATTCAACCAGATGGAGGAGGAAAGGATAACACCTGATTTGGTGACATGGAATAGTTTGGTTTCAGGTTATTCAATGTGGGGCCGCAGTGAGGAAGCTTTGGCTGTGATCAATCGGATCAAGAGTTTGGGACTTAATCCTAATGTGGTGTCCTGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAACTACATGGATGCCCTACAGTTTTTCAGCCAAATgcaagaagaaaaagtaaaaccTAACTCTACTACCATTTGCAGCTTACTTCGGGCATGCGCAGGCCCATCACTGTTAAAGAAAGGTGAAGAGGTACACTGCTTCAGCATGAGACTTGGGTTTGTGGATGACATATATATAGCCACAGCCCTCATTGACATGTATAGTAAGGGAGGAAAATTAAAAGTAGCCCATGAGGTTTTCAGGAATATTAAGGAGAAAACACTACCATGTTGGAATTGCATGTTGATGGGATATGCTATTTATGGCCATGGGGAAGAGGTATTCAAACTTTTTGACAACATGTGCAAAACAGGTATCAGACCTGATGCTATAACCTTCACAGCTCTTCTCTCTGGCTGCAAGAATTCAGGTTTAGTTATGGAAGGGTGGAAGTACTTTGACAGTATGAAGACAGATTACAATATTAGTCCAAGAATTGAGCACTACTCATGCATGGTAGATCTTCTTGGAAAAGCTGGTTTTCTTGATGAAGCTTTGGATTTCATCCATGACATGCCAATAAAGGCAGATGCTAGTATTTGGGGCGCTCTTCTTGCAGCCTGCAGAATTCACAAAGACATTAAGCTAGCAGAGACTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAATTCTGCTAACTACGTGTTGATGATGAACATATATTCCACTTTTGACAGATGGGGGGACGTAGAGTGCCTTAAAAACACAATGACTGCCATGGGGGTGAAAATGTCAAATGTCTGGAGTTGGACACAAGTGAAGCAGACTATTCATGTGTTCTCCAGAGAAGGGAAATCACATCCAGAAGAAGgagaaatatattttgagttatatcAATTAGTCTCTGAGATAAGAAAGCTGGGATATGTACCTGATATCAGTTGTGTCCATCAGAACATTGATGCCGATGAGAAGGAGAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCTATGACATTTGGactgatgaaaattaaaagtggATCACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCATACAGTAGCAAAGTACATTTCTTTGGCTCGAAACCACGAGATTTTCCTCAGAGATGGTAGTCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGCAAGGATCGTTGGTAA 2847 0.3969 MTFCISFQYHSFMDNLGAHFHHLNSYFVQNPRTLLPPRSHSPSSVSLGMSDTLLVSSTQSSSPKFSPFSHLLDNLGETRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFVSATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHNKGVEFDSIALTVVLKICLALMDLWFGMEVHACLVKRGFHVDVHLSCALINLYEKCLGIDRANQVFDETPLQEQFLWNTIVMANLRSERWENALELCRQMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTAICNSIVSMYSRNNRVELARAVFDSMEDHNLSSWNSIISSYAVNGRLNDAWDIFQEMESSGIKPDIITWNSLLSGHLLRGSYEMVLTNFRSLQHAGFKPDSCSITSALQAVIELGWFNLGKEIHGYIMRSKLDYDVYVCTSLVDMYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFNKAEKLFNQMEEERITPDLVTWNSLVSGYSMWGRSEEALAVINRIKSLGLNPNVVSWTAMISGCCQNENYMDALQFFSQMQEEKVKPNSTTICSLLRACAGPSLLKKGEEVHCFSMRLGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMLMGYAIYGHGEEVFKLFDNMCKTGIRPDAITFTALLSGCKNSGLVMEGWKYFDSMKTDYNISPRIEHYSCMVDLLGKAGFLDEALDFIHDMPIKADASIWGALLAACRIHKDIKLAETAARNLFRLEPYNSANYVLMMNIYSTFDRWGDVECLKNTMTAMGVKMSNVWSWTQVKQTIHVFSREGKSHPEEGEIYFELYQLVSEIRKLGYVPDISCVHQNIDADEKEKVLLSHTEKLAMTFGLMKIKSGSPIRVVKNTRICQDCHTVAKYISLARNHEIFLRDGSRFHHFMNGECSCKDRW 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Ssu4g2925 948 PANTHER OS05G0586900 PROTEIN 66 178 - -
Ssu4g2925 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 232 936 - -
Ssu4g2925 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 147 228 - -
Ssu4g2925 948 Pfam DYW family of nucleic acid deaminases 856 948 IPR032867 GO:0008270
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Ssu4g2925 948 PANTHER OS05G0586900 PROTEIN 232 936 - -
Ssu4g2925 948 PANTHER OS05G0586900 PROTEIN 147 228 - -
Ssu4g2925 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 333 IPR002885 -
Ssu4g2925 948 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 66 178 - -
Ssu4g2925 948 Pfam PPR repeat 615 640 IPR002885 -
Ssu4g2925 948 Pfam PPR repeat 715 739 IPR002885 -
Ssu4g2925 948 Pfam PPR repeat 236 262 IPR002885 -
Ssu4g2925 948 Pfam E motif 758 818 IPR046848 -
Ssu4g2925 948 Pfam PPR repeat family 469 516 IPR002885 -
Ssu4g2925 948 Pfam PPR repeat family 539 587 IPR002885 -
Ssu4g2925 948 Pfam PPR repeat family 334 379 IPR002885 -
Ssu4g2925 948 Pfam PPR repeat family 644 687 IPR002885 -
Ssu4g2925 948 Gene3D Tetratricopeptide repeat domain 612 777 IPR011990 GO:0005515
Ssu4g2925 948 Gene3D Tetratricopeptide repeat domain 245 399 IPR011990 GO:0005515
Ssu4g2925 948 Gene3D Tetratricopeptide repeat domain 473 605 IPR011990 GO:0005515
Ssu4g2925 948 Gene3D Tetratricopeptide repeat domain 57 185 IPR011990 GO:0005515
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 644 677 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 507 541 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 473 505 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 542 575 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 306 335 IPR002885 -
Ssu4g2925 948 TIGRFAM PPR: pentatricopeptide repeat domain 716 739 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2925 Ssu-Chr4 74621423 74624269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2925 146 948 Glycoside Hydrolase AT3G49170 30.012 3.93e-128 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2925 - - gmx:100796795 1721.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2925 4 74621423 74624269 Ssu4g2925 4 74621423 74624269 ECH