Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2922 ATGGCAAGAGTGAAGCACGCGCCAGCTTCTCGCAAAACCGGTATAAGAAAGAAAGCGCAATCCGCATCCACATCGACACCACAACAATCACCTGCAACTAGGAGGAGGAGAGGTGAACAAGAGGAGCCGCAGGAGGcgcCTGAGACTCAGGGAAGGAAGAAAAGGCGCAATAAGCCGGGGTCAGTGGCGCTTCGCGAGATTCGGCATTTTCAGAAGTCTTGCGAGCTTCTTATCCCAGCTGCACCCTTTATAAGATGTGTTAAACAGATTACGCACAGCCACTCTACACAGGTGTCTCGCTGGACACCTGAAGCTGTGGTGGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTGTTTGAAGATGGAATGCTCTGTGCAATTCACGCAAAGCGTGTTACTCTTATGAAAAAGGATATTGAGTTGGCCCGGAGGCTTGGAGGAATAGGAAGGCCTTGGTGA 465 0.5054 MARVKHAPASRKTGIRKKAQSASTSTPQQSPATRRRRGEQEEPQEAPETQGRKKRRNKPGSVALREIRHFQKSCELLIPAAPFIRCVKQITHSHSTQVSRWTPEAVVALQEAAEEYLVHLFEDGMLCAIHAKRVTLMKKDIELARRLGGIGRPW 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2922 154 Pfam Core histone H2A/H2B/H3/H4 26 147 IPR007125 GO:0003677
Ssu4g2922 154 SMART h35 49 152 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 MobiDBLite consensus disorder prediction 34 61 - -
Ssu4g2922 154 MobiDBLite consensus disorder prediction 16 33 - -
Ssu4g2922 154 Gene3D Histone, subunit A 9 150 IPR009072 GO:0046982
Ssu4g2922 154 PANTHER HISTONE H3 9 154 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 PRINTS Histone H3 signature 114 130 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 PRINTS Histone H3 signature 130 151 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 PRINTS Histone H3 signature 49 70 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 PRINTS Histone H3 signature 73 90 IPR000164 GO:0000786|GO:0003677|GO:0030527
Ssu4g2922 154 SUPERFAMILY Histone-fold 31 150 IPR009072 GO:0046982
Ssu4g2922 154 PANTHER HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12 9 154 - -
Ssu4g2922 154 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2922 Ssu-Chr4 74593452 74598323 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2922 K11253 - gmx:100811872 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2922 4 74593452 74598323 Ssu4g2922 4 74593452 74598323 ECH