Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2915 ATGGCTTCGGAGAATGTGAAGACCGGGGAATCCGCCGTGACGACGATCGTGAATCTCGCGGAGGAAGCGAAGCTCGCCAGAGAAGGCGTCGTCAGGGCTCCCAGCTACGCGCTCGCCAGCATCTGCAAGTCGCTCGTCGCCGGTGGAGTCGCTGGAGGAGTGTCACGTACTGCAGTTGCTCCGCTTGAACGGTTGAAAATTTTGCTACAGGTCcagaaccctcataacattaAATACAATGGAACATTACAAGGCCTAAAATATATATGGAGAACTGAAGGTTTCCGTGGACTTTTCAAAGGGAATGGTACTAATTGTGCTCGAATTGTACCTAATTCTGCTGTGAAGTTCTTTAGTTATGAGCAAGCTTCTAAAGGTATACTGTATCTGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTCTTTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATTACTGTGCagACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTTAGGGAAGAAGGTCCTCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTCTATGAGTCTCTAAAAGATTGGTTAATTAAATCCAACCCATTTGGTCTAGTTGAAAACTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGATGTTATTCGTCGAAGAATGCAGATGGTTGGTTGGAGCCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTCCCACTTGAGTGCACTGGAATGATTGATGCATTTAGGAAAACTGTTCAGCATGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCAATTGCATTTGTAACATATGAGGTGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTAA 1068 0.4494 MASENVKTGESAVTTIVNLAEEAKLAREGVVRAPSYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTLQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPFGLVENSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWSHAASVLTGDGRGKVPLECTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Ssu4g2915 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Ssu4g2915 355 PANTHER BNAA09G39370D PROTEIN 1 350 - -
Ssu4g2915 355 Gene3D Mitochondrial carrier domain 37 349 IPR023395 -
Ssu4g2915 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Ssu4g2915 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Ssu4g2915 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Ssu4g2915 355 PANTHER SOLUTE CARRIER FAMILY 25 1 350 - -
Ssu4g2915 355 SUPERFAMILY Mitochondrial carrier 40 342 IPR023395 -
Ssu4g2915 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Ssu4g2915 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Ssu4g2915 355 Pfam Mitochondrial carrier protein 40 125 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2915 Ssu-Chr4 74418064 74425403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2915 45 350 EF-hand Containing Proteins AT5G51050 38.111 2.53e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2915 K14684 - gmx:100814032 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2915 4 74418064 74425403 Ssu4g2915 4 74418064 74425403 ECH
Ssu4g0153 4 2626172 2631057 Ssu4g2915 4 74418064 74425403 PCT