Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2909 ATGGCGGCCTTCGACCACTTCGGGAACATGTACGACGTCGCTTTCAAACCCCGCTTGCTTCTCACCCTCATCAAAGACCACCTTCCGGACGAGACCCGCCCCTTTTCCGACCCCTCCGAACTCTCGAAGGTCGTGTCGCTGATCAAAACGCACTCTCTCCTCACCGAGTCTTTCGCGGAATCCACGCGCCCCAAACAAATCGAAGCATGGAAATCCGCACTCGCTTCCTGGCTCAACCGCATTTTCTCCCTCCTCTCTACCACcatgCCAGATAAATGCTGGGCGGGGATATCTTTGTTGGGGGTTACTTGTGAAGAGTGCAGCTCTGAGCGTTTCCTAGAATCTTACTCTCTGTGGTTCCAGAAGTTGCTTTCTTTTCTACAGTCACCAGCAGATTCTCATTTAGTGAAGGTAGCTGCTTGTGCTTCAATGTCTGATTTATTTGTAAGGTTAAGTGGATATCCTAAGATCAAGAAAGATTCATCTTCCTGTGCTGTGAAAGTTGTTCAGCCTACTTTGAAGATGTTGAATGATGAAAACTCAGAGGCAGTATGGGATGCTGCAGTTCATTTGTTATGTACCATAATAACTTCATTCCCATTTTCTATTCGTAATCATTATGATAATGTTGAATCTGCTATTGCTTTAAAACTTTTGTCTGGTGGATGCAGTCTTGATATGTTGAAGAAACTTGCACATTGCCTCGCACTGCTTCCAAAATCAAAAGGAGATGAAGAAAGCTGGTCTGTGATGATGCAGAAAATTTTGGTGTTAATaaatgatcaattaaatttagcCTTTCATGGTCTGGAAGAAGAAACCATGCGTAATGAGGTTACTAGGTTGTTGGTTTTGCCTGGAAAACATCCTCCACCACCATTAGGAGGCTATATATTGGCAGAAGAAGTTAGTAACAAGGCATCAAAAACGTCTGAGCAATCACTGATGTCTAATGTCTCTACACTTATGTTTGGCTGTTGTGTGATGCTTACAAATTCATATCCTGTTAAGGTAAATGTGCCTGTTCGCCTGTTATTGGCCCTTGTCGAGAGAATTCTGATGGTAAATGGCTCTTTGCCACAAATGTCATTGCCATTCATGACTGCCAAGCAGCAAGAGAACATTTGTTCAGAACTTCCAGTTTTGCACTTGAGTAGCCTGGAATTGCTTACGGCTATCATAAAGGCCATGGGCAGTCAACTATTACCATATGCTGCCTCTATTGTACGTATCGTTACAAAGTACTTCAAGACATGTGAGCTGCCAGAATTAAGGATTAATGTCTATTCAGTCACAAGGAATTTGCTCATAACCATGGGTGTTGGAATGGCTTTATACCTGGCACAGGAAGTTATCAACAATGCGTTTACTGATTTAAGTAGTATTGAGCATAAGAATGGTGGCATGTTAAATGGTTCAAATTCAAATGCCTCTTCTGGAGCACTGCTACTGCCAAATCATAGAAAAAGGAAGCACAGCAGGACAAATGGTTCTCTTCAGGAGCTTGATGAAGGTGGTGGTTTGGGTGTGGAAGTTCCCAAGAATCGTCCATTGACTCCAATTTCTCTGAGGATAGCTGCACTTGAGACATTAGAGGCTCTTGTTACTGTGGCTGGTTCTTTAAAATCGGAACCATGGAGATCAAAAGTTGATGGCCTTTTGATAGTCATAGCAATGGATTCTTTTAAGGAAGGATCAGTTAGTGAAGAAACAAGTGTGTTTCAACAAAAGGAACCTGCTGCAACTGCCACAGATTTGCAGCTTGCTGCATTGCGTGCTTTATTGgtatcttttctttcatttgctCGGGTACGACCTCCATATTTAGCCCAGGGTCTTGAACTTTTCCGTAGAGGGAAGCAACGAACTGGAACAAAACTGGCCGATTTCTGTGCCCATGCTCTGTTAACCTTGGAAGTGCTTATACATCCTCGGGCACTTCCATTGGTAGATTACGCCTATGCAAATATCAATTCTTTTGGTGAAGCTCCCAGTAATCTCCAACATGAATATTTTGGCCGGAGCTACcgttccccaaatggtttacaAGTTCCTCCGGACTATGATGATGATCTGTGTGCTAGATGGCTTGAAAATGGCAATGAAGCTGATGTGTCATTggataaaaatacaaaacacacCCAAGAGCCTTCTGAAGCTTGCAGAGCTAATGACTCCGAAGTGCATGTATCTTCTGGCACCAATATACAGGAGAGGACTGAGATGGTGTCTGAGACTGCCACTTGTGCAGATGTTGAAATGAAAACTGTTGAGGATGAAATCAATTTCAAGCTGGATCAACCGGGAGAATCTGTGGTGCAATTTCAGGAACCCATCTCTTGCACCACAAACATCCCCATGGCTGAAACTCACAGTGATGTAGCTGATGATATAGTATCTGAGAAGATTGTTTCAGACAGCACTGTTCCTCATAATGAAGCCAGTCATATGGAATCAGGACAAGGAAGCtcggttaaaaaagactttGAATTAGCTTCTCAGAGTAATAGTTTATTGCAAAGAACCTCAGGCTCTAATATTTTTCAGgaatttgcttttaaattggATTATGACAATTCACTGGCTGATGAAGATGATTTTCCTGATATTATGGATGGAGACCCAGATTCTGATTCCGAATAA 2643 0.412 MAAFDHFGNMYDVAFKPRLLLTLIKDHLPDETRPFSDPSELSKVVSLIKTHSLLTESFAESTRPKQIEAWKSALASWLNRIFSLLSTTMPDKCWAGISLLGVTCEECSSERFLESYSLWFQKLLSFLQSPADSHLVKVAACASMSDLFVRLSGYPKIKKDSSSCAVKVVQPTLKMLNDENSEAVWDAAVHLLCTIITSFPFSIRNHYDNVESAIALKLLSGGCSLDMLKKLAHCLALLPKSKGDEESWSVMMQKILVLINDQLNLAFHGLEEETMRNEVTRLLVLPGKHPPPPLGGYILAEEVSNKASKTSEQSLMSNVSTLMFGCCVMLTNSYPVKVNVPVRLLLALVERILMVNGSLPQMSLPFMTAKQQENICSELPVLHLSSLELLTAIIKAMGSQLLPYAASIVRIVTKYFKTCELPELRINVYSVTRNLLITMGVGMALYLAQEVINNAFTDLSSIEHKNGGMLNGSNSNASSGALLLPNHRKRKHSRTNGSLQELDEGGGLGVEVPKNRPLTPISLRIAALETLEALVTVAGSLKSEPWRSKVDGLLIVIAMDSFKEGSVSEETSVFQQKEPAATATDLQLAALRALLVSFLSFARVRPPYLAQGLELFRRGKQRTGTKLADFCAHALLTLEVLIHPRALPLVDYAYANINSFGEAPSNLQHEYFGRSYRSPNGLQVPPDYDDDLCARWLENGNEADVSLDKNTKHTQEPSEACRANDSEVHVSSGTNIQERTEMVSETATCADVEMKTVEDEINFKLDQPGESVVQFQEPISCTTNIPMAETHSDVADDIVSEKIVSDSTVPHNEASHMESGQGSSVKKDFELASQSNSLLQRTSGSNIFQEFAFKLDYDNSLADEDDFPDIMDGDPDSDSE 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2909 880 MobiDBLite consensus disorder prediction 861 880 - -
Ssu4g2909 880 MobiDBLite consensus disorder prediction 807 827 - -
Ssu4g2909 880 PANTHER PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 9 878 - -
Ssu4g2909 880 Pfam rRNA processing/ribosome biogenesis 21 220 IPR012583 -
Ssu4g2909 880 MobiDBLite consensus disorder prediction 706 723 - -
Ssu4g2909 880 MobiDBLite consensus disorder prediction 706 734 - -
Ssu4g2909 880 Gene3D - 56 471 IPR011989 -
Ssu4g2909 880 MobiDBLite consensus disorder prediction 862 880 - -
Ssu4g2909 880 PANTHER PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 9 878 - -
Ssu4g2909 880 SUPERFAMILY ARM repeat 76 542 IPR016024 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2909 - - gmx:100800871 1436.4