Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g2908 | ATGCCGACCGGGTACGTATCGGCGAACTCCTCCGGCGAAGAGGAGGCGTGGCTGTGGGCGCAGATCAAGGCGGAGGCGCGCCGCGACGCCGAGTCGGAGCCGGCGCTGGCGAGCTACCTCTACTCCACGATCCTCTCACACTCCTCTCTGGAACGATCCTTGTCTTTCCACCTCGGGAACAAGCTCTGTTCCTCGACGCTCCTCTCGACGCTCCTCTACGACCTCTTCCTCAACGCGTTCTCCTCCGACCCCTCCCTCCGCTCCGCCGCCGTCGCCGACCTCCGCGCCGCCCGCGAACGCGACCCCGCCTGCGTCTCCTACTCCCACTGCCTCCTCAATTACAAAGGCTTCCTTGCTTGCCAGGCGCACCGTGTGGCGCACCTGTTGTGGGGGCAATCACGGCGGCCGTTGGCTTTGGCGCTGCATTCTCGGATCGCAGATGTGTTCGCGGTGGACATTCACCCGGCGGCGAGGATTGGGAAGGGGATTCTGTTTGACCACGCCACCGGGGTGGTGGTGGGGGAGACGGCGGTAATTGGGAACAACGTGTCGATTCTGCACCATGTTACGCTGGGTGGGACGGGTAAGGTTGGTGGGGACCGGCATCCCAAGATTGGGGATGGGGTGCTTATTGGTGCTGGGGCCACCATTCTGGGGAATATTAAGATTGGGGATGGTGCCAAGGTTGGTGCTGGCTCGGTGGTTTTGATTGATGTGCCGCCACAGACGACGGCGGTTGGGAACCCGGCGAGGTTGGTTGGTGGGAAGGAGAGGCCCTCCAAGCATGAGGATGTGCCTGGGGAGTCCATGGACCATACTTCCTTTATTGCTGAGTGGTCAGACTATATCATCTGA | 855 | 0.6199 | MPTGYVSANSSGEEEAWLWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWGQSRRPLALALHSRIADVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNIKIGDGAKVGAGSVVLIDVPPQTTAVGNPARLVGGKERPSKHEDVPGESMDHTSFIAEWSDYII | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g2908 | 284 | Pfam | Serine acetyltransferase, N-terminal | 18 | 122 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 | |
| Ssu4g2908 | 284 | CDD | LbH_SAT | 149 | 249 | IPR045304 | - | |
| Ssu4g2908 | 284 | SMART | SATase_N_2_a | 18 | 122 | IPR010493 | GO:0005737|GO:0006535|GO:0009001 | |
| Ssu4g2908 | 284 | ProSitePatterns | Hexapeptide-repeat containing-transferases signature. | 211 | 239 | IPR018357 | GO:0016740 | |
| Ssu4g2908 | 284 | Pfam | Hexapeptide repeat of succinyl-transferase | 169 | 185 | IPR001451 | - | |
| Ssu4g2908 | 284 | TIGRFAM | cysE: serine O-acetyltransferase | 92 | 251 | IPR005881 | GO:0005737|GO:0006535|GO:0009001 | |
| Ssu4g2908 | 284 | Pfam | Bacterial transferase hexapeptide (six repeats) | 202 | 235 | IPR001451 | - | |
| Ssu4g2908 | 284 | Gene3D | Hexapeptide repeat proteins | 152 | 272 | - | - | |
| Ssu4g2908 | 284 | PANTHER | SERINE ACETYLTRANSFERASE | 6 | 284 | - | - | |
| Ssu4g2908 | 284 | Gene3D | serine acetyltransferase, domain 1 | 2 | 151 | IPR042122 | - | |
| Ssu4g2908 | 284 | PANTHER | BNAC03G13300D PROTEIN | 6 | 284 | - | - | |
| Ssu4g2908 | 284 | SUPERFAMILY | Trimeric LpxA-like enzymes | 14 | 254 | IPR011004 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g2908 | Ssu-Chr4 | 74257896 | 74259058 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu4g2908 | 18 | 272 | Miscellaneous Gene Families | AT2G17640 | 56.863 | 3.27e-91 | 271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g2908 | K00640 | - | gmx:547632 | 532.332 |