Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2904 ATGCCTCCTTCAACTTCGTGGCTGGTGCTGGCTATTCTCGTGTTGGCGGCTGCAACGCCTCCAGCACGTGCCACGCTGGTCGCGTCGTTGGACGGTCAGCGAGAGTTTGATTATTTCGCTTTGGCGTTGCAATGGCCCGGCACTTACTGCAAACGCACCCGCCATTGCTGTCCCTCCAATGGTTGCTGCAGAGGCTCCAATTCTCCGACAGTATTCACCATACATGGACTCTGGCCTGACTATAATGATGGAACCTGGCCAGCCTGTTGCTCTAGATCTATTTTCGATCCAAAAGAGATATCGACATTGACTAATGCTTTAGAGCAATATTGGCCATCATTGAGTTGTAGCTCGTCATCAACATGCCATGGTGGGAAAGGTTCATTTTGGGCACATGAGTGGGAGAAACATGGCACATGCTCTTATCCTGTGATTCGAAAtgaatatgattattttctGACAACTCTGAATGTCtatttcaaatataatgttACGAGTGTTCTAAATGATGCTGGATATGTTCCCTCTAATACTGAAATGTATCCCCTTGGAGGCATTATCTCTGCCATTGAGAATGCTTTTCATGCATCTCCTTTAATAGTTTGCTCAAAAGATTCCATTGAGGAACTTCGCCTATGCTTTTATAAGGACTTCAAGCCACGAGATTGTGTTATTGGATCTGACATTAAAATTGACATGGTTACTTCAAAAGGATCTTGTCCCAAATATGTTAGCCTGCCGGAGCCGGTATCAGTAAGGCGcaatggacttcaaagttggGTCTCTGATGATGCAGCTCTTTAA 804 0.4328 MPPSTSWLVLAILVLAAATPPARATLVASLDGQREFDYFALALQWPGTYCKRTRHCCPSNGCCRGSNSPTVFTIHGLWPDYNDGTWPACCSRSIFDPKEISTLTNALEQYWPSLSCSSSSTCHGGKGSFWAHEWEKHGTCSYPVIRNEYDYFLTTLNVYFKYNVTSVLNDAGYVPSNTEMYPLGGIISAIENAFHASPLIVCSKDSIEELRLCFYKDFKPRDCVIGSDIKIDMVTSKGSCPKYVSLPEPVSVRRNGLQSWVSDDAAL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2904 267 Gene3D - 32 250 IPR036430 GO:0003723|GO:0033897
Ssu4g2904 267 Pfam Ribonuclease T2 family 36 223 IPR001568 GO:0003723|GO:0033897
Ssu4g2904 267 ProSitePatterns Ribonuclease T2 family histidine active site 1. 72 79 IPR018188 GO:0003723|GO:0033897
Ssu4g2904 267 SUPERFAMILY Ribonuclease Rh-like 35 247 IPR036430 GO:0003723|GO:0033897
Ssu4g2904 267 PANTHER RIBONUCLEASE T2 12 253 IPR001568 GO:0003723|GO:0033897
Ssu4g2904 267 CDD RNase_T2_euk 36 242 IPR033697 -
Ssu4g2904 267 ProSitePatterns Ribonuclease T2 family histidine active site 2. 129 140 IPR033130 -
Ssu4g2904 267 PANTHER RIBONUCLEASE 2-LIKE ISOFORM X1 12 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2904 Ssu-Chr4 74175085 74180567 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2904 K01166 - gmx:100789614 468.388