Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2887 ATGAGGGATTTGAATTCGGATCTGTTTGACCCTGTCGTGGCGATGGAGTCCGAGTGGTCCCGCGGCGGTTCCAATTCCGACGCCGATTTCGCCTTCGCCTTCAACGACAGCAACTTCTCCGACAGGGTTCTCCGGATCGAGATCATTACCGACCCCGTCGACGCCCGACCCGAGTCCGACGCCTGCACCACCATTGCCGACTGGGCTCGCCACCGCAAGCGCCGTCGCGAGGACATCAAAAAGGATAACgGTGCGGATCTAGCTTCGGTACCAGACGAGCAAATTTTGAACGGGAATCAACCTGATGTGGATGACTGTGAAAATCAAGACGAAGAGGCTGTTGCAATGGTTGAAGAACCGCATTCTGGTGATGAAGCTACAAATAGTAATGATTCAGACTGGAGCATGGATTGTTCTGCAGGTGCAGTTGTTAGAGTTAAAACGCTGCATATCAGTTCACCTATCTTGGCTGCTAAAAGTCCTTTCTTCTATAAGCTTTTCTCAAATGGGATGAGGGAGTCTGAGCAGAGACATGTCACCCTCAGAATTAATGCCTCTGAAGAAGCTGCTCTCATGGAGCTACTGAATTTTATGTACAGTAATACGTTGAGCACTACTACGGCACCGGCTTTGCTGGATGTGTTGATGGCTGCTGATAAATTTGAAGTTGCTTCATGCATGAGATACTGCAGCCGGTTACTGCGGACTATGCCTATGACGCCTGACTCCGCATTGCTTTATCTGGAGCTTCCTTCAAGTGTCTTAATGGCTGATGCAGTCCAACCATTGACTGATGCTGCAAAGCAGTATCTGGCTGGTCGATACAAGGATATAACCAAGTTCCATGAAGAGGTTATGGCCTTGCCCCTAGCTGGAGTAGAGGCAATACTGTCTAGCGATGATCTCCAGGTTGCATCAGAAGATGCTGTATATGATTTTGTGTTGAAGTGGTCTCGACTGCAGTACCCTAAACTGGAAGAAAGGCGAGAAGTCCTGGGTGCCCGGCTTGCACGTTTAATTCGCTTCCCTTACATGACCTGCCGAAAGCTTAAGAAGGTCTTGACCTGTTCTGACTTTGACCATGATGTTGCCTCCAAGCTTGTACTTGAGGGCCTATTTTTCAAGGCTGAGGCTCCGCATCGCCAACGGTCATTGGCAGCAGAAGACTCTGCTTCTTCAAACCGTCGTTTTGTGGAGAGGGCATACAAGTATCGCCCCGTGAAGGTAGTAGAATTTGAACTTCCCCGGCAGCAGTGTGTGGTGTACTTGGATCTGAAGCGGGAGGAGTGTGCCAATTTGTTCCCATCTGGCCGGGTTTATTCTCAGGCATTCCATTTGGGTGGACAAGGTTTTTTCCTATCAGCACATTGCAACATGGACCAACAGAGCTCTTTCCATTGCTTTGGGCTATTTTTGGGAATGCAGGAAAAGGGCTCAGTGAGCTTTGCCGTTGACTATGAGTTTGCTGCGAGGTCTAGGCCAACAGAGGAATTTGTTAGCAAGTACAAAGGCAACTATGTATTCACAGGGGGAAAGGCTGTTGGCTATAGAAACTTGTTTGCTATTCCATGGACTTCGTTCATGGCTGAGGATAGTCTTTACTTCATCAATGGTGTCCTCCACCTAAGAGCCGAGCTCACCATCAGGCACTGA 1653 0.49 MRDLNSDLFDPVVAMESEWSRGGSNSDADFAFAFNDSNFSDRVLRIEIITDPVDARPESDACTTIADWARHRKRRREDIKKDNGADLASVPDEQILNGNQPDVDDCENQDEEAVAMVEEPHSGDEATNSNDSDWSMDCSAGAVVRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNTLSTTTAPALLDVLMAADKFEVASCMRYCSRLLRTMPMTPDSALLYLELPSSVLMADAVQPLTDAAKQYLAGRYKDITKFHEEVMALPLAGVEAILSSDDLQVASEDAVYDFVLKWSRLQYPKLEERREVLGARLARLIRFPYMTCRKLKKVLTCSDFDHDVASKLVLEGLFFKAEAPHRQRSLAAEDSASSNRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECANLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSRPTEEFVSKYKGNYVFTGGKAVGYRNLFAIPWTSFMAEDSLYFINGVLHLRAELTIRH 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2887 550 SUPERFAMILY POZ domain 147 234 IPR011333 -
Ssu4g2887 550 SUPERFAMILY TRAF domain-like 437 548 - -
Ssu4g2887 550 CDD BTB_POZ_ZBTB_KLHL-like 143 221 - -
Ssu4g2887 550 Gene3D - 270 375 - -
Ssu4g2887 550 ProSiteProfiles BTB domain profile. 138 207 IPR000210 GO:0005515
Ssu4g2887 550 SMART BACK_2 253 355 IPR011705 -
Ssu4g2887 550 Pfam BTB/POZ domain 147 235 IPR000210 GO:0005515
Ssu4g2887 550 Gene3D Potassium Channel Kv1.1; Chain A 127 258 IPR011333 -
Ssu4g2887 550 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN POB1 6 550 - -
Ssu4g2887 550 MobiDBLite consensus disorder prediction 79 101 - -
Ssu4g2887 550 PANTHER OS02G0260700 PROTEIN 6 550 IPR045890 -
Ssu4g2887 550 Pfam BTB And C-terminal Kelch 261 353 IPR011705 -
Ssu4g2887 550 SMART BTB_4 138 238 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2887 Ssu-Chr4 73891098 73894258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2887 - - gmx:100776595 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2887 4 73891098 73894258 Ssu4g2887 4 73891098 73894258 ECH