Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2812 ATGTATgcgaaaaatgaaaatatagtgGACGTGTGCAGACTATTTGATAGAATGGGGATTCGAAATGTTGTCGCATGGAACACCATTATTATTGGCTCTGGGAATTGTGGAGAAGGGAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCGCGAAGGGTATTTTCCCGATGAACTGACTATTTCCAGCACTATTAGTTCATGTGGCTATGCTTCTGCCATTACTGAAACAATGCAAACTCATGCTTTTGCAGTTAAATCATCATTTCAAGATTTTTTATCTGTTGCTAACTCTTTGATTAGCGCGTACTCCAAGTGTGGTAGTATTATTAATGCATGTAAATGCTTCAGATTAACTGCAGAACCTGATCTTGTTACATGGACTTCATTGATAAATGCATATGCATTCCATGGTCTTGCCAAAGAAGCAATTGAAATGTTTGAGAAGATGCTATCTTGTGGAGTAATACCAGATCGAATCTCTTTTCTAGGTGTTCTCTCTGCTTGTTCCCATTGTGGGCTTGTGGCTAAGGGACTTCACTACTTTAACTTGATGACTAGTGTGTATCAGATTGTTCCTGGTTCAGAACACTATACCTCCCTTGTTGACCTTCTTGGACGATATGGTCTTATAAATGAGGCTTTTGAATTCTTGAGGTCAATGCCAATGGAAGTTGAATCAAATGTGTTGGGAGCATTTATTGGAACTTGCAATCTCCATGCAAATATAGGATTGGCCAAATGGGCCGCAGAAAAGCTCTTCATCATAGAGCCAGAGAAGAATGTAAACTATGCAGTTATGTCTAACATTTATGCTTCCCATAGACATTGGTATGATGTGGAAAGAGTTCGTAGAATGGTGGGGAACAAGTGTGATGCAAGAGTCCCAGGTTGCAGCTGGATAGAGATTGGTAATCAAGTTCATTCATTTGTATCCAATGATAAGACACACCCTAAAGCTTTAGAAATGTATGCTACATTGAAAATGCTGCTTTGGccaatgaaggaaaaaaatggtATGAATTTGTGA 1029 0.378 MYAKNENIVDVCRLFDRMGIRNVVAWNTIIIGSGNCGEGNEVMKLLREMLREGYFPDELTISSTISSCGYASAITETMQTHAFAVKSSFQDFLSVANSLISAYSKCGSIINACKCFRLTAEPDLVTWTSLINAYAFHGLAKEAIEMFEKMLSCGVIPDRISFLGVLSACSHCGLVAKGLHYFNLMTSVYQIVPGSEHYTSLVDLLGRYGLINEAFEFLRSMPMEVESNVLGAFIGTCNLHANIGLAKWAAEKLFIIEPEKNVNYAVMSNIYASHRHWYDVERVRRMVGNKCDARVPGCSWIEIGNQVHSFVSNDKTHPKALEMYATLKMLLWPMKEKNGMNL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2812 342 TIGRFAM PPR: pentatricopeptide repeat domain 125 158 IPR002885 -
Ssu4g2812 342 TIGRFAM PPR: pentatricopeptide repeat domain 24 58 IPR002885 -
Ssu4g2812 342 Pfam PPR repeat family 122 170 IPR002885 -
Ssu4g2812 342 Pfam PPR repeat family 21 68 IPR002885 -
Ssu4g2812 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Ssu4g2812 342 PANTHER OS07G0259400 PROTEIN 1 322 - -
Ssu4g2812 342 PANTHER OS07G0578800 PROTEIN-RELATED 1 322 IPR045215 GO:0003723|GO:0009451
Ssu4g2812 342 Pfam PPR repeat 97 117 IPR002885 -
Ssu4g2812 342 Pfam PPR repeat 197 222 IPR002885 -
Ssu4g2812 342 Pfam E motif 240 302 IPR046848 -
Ssu4g2812 342 Gene3D Tetratricopeptide repeat domain 94 330 IPR011990 GO:0005515
Ssu4g2812 342 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Ssu4g2812 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2812 Ssu-Chr4 71620618 71621646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2812 1 336 Glycoside Hydrolase AT3G49170 35.417 3.00e-72 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2812 - - ccaj:109802654 623.624