Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2805 ATGTCTTCTCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACCAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTTCATGGACCCAATGAGAGTCCTTATCACGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAAATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTAATCAACCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCGAATCCGTCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGCCTGAAGACATAGGAGCTGCCACAGAAGAGAAATCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG 552 0.4275 MSSPSKRREMDLMKLMMSDYQVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEEKSSDEELTEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2805 183 MobiDBLite consensus disorder prediction 150 183 - -
Ssu4g2805 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Ssu4g2805 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Ssu4g2805 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Ssu4g2805 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Ssu4g2805 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Ssu4g2805 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Ssu4g2805 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Ssu4g2805 183 CDD UBCc 7 143 IPR000608 -
Ssu4g2805 183 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2805 Ssu-Chr4 71527151 71529734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2805 3 150 Miscellaneous Gene Families AT3G17000 23.418 8.30e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2805 K10576 - gmx:548025 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2805 4 71527151 71529734 Ssu4g2805 4 71527151 71529734 ECH
Ssu3g0705 3 17066992 17069651 Ssu4g2805 4 71527151 71529734 PCT