Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2800 ATGGCAAAGTTCCCGCCGATAACCGAATGCAACGGAACATCGTCGTCGCCGCGCGAGTCCATCGCCGCCGATCTCGACGGCACGCTCCTCATCTCCCGGAGCTCGTTCCCGTACTTCATGCTCGTCGCCGTCGAGGCCGGCAGCCTCCTCCGCggcctcctcctcctcctctccaCTCCGTTCGTCATCGTCGCGTACCTCTTCGTCTCTGAATCCCTCGGCATCCAGATTCTCATCTTCATCTCCTTCTCCGGCCTCAAGATCCGCGACATCGAACTCGTCTCACGCGCCGTGCTCCCTAGGTTTTATGCTGCGGACGTGAGGAAGGAGAGCTTCGAGGCGTTCGACCGGTGCAAGAGGAAAGTTATTGTGACAGCGAACCCGACGGTGATGGTGGAGCCGTTCGTGAGGGACTTTCTCGGCGGAGACAAGGTTCTAGGCACGGAGATCGAGGTGAATCCGAAGACGAAGAAGGCCACGGGGTTCGTCAAGAAGCCTGGCGTGCTCGTCGGAAAGTGGAAGCGTGTCGCCGTTTTGAAAGAGTTCGGTGACGAGACGCCGGATATCGGAATCGGAGATCGTTCTACGGATCACGATTTCATGTCTATCTGCAAGGAGGGTTACATGGTACCTCCCAGCAAATCAGCAAAACCAGTCCCACAGGAGCGTCTGAAGAGCAGGCTCATCTTCCACGACGGTCGTTTCGTGCAGAAACCAGACCCACTGAACGCCCTGATCACCTTCTTGTGGCTCCCCTTCGgcttcatcctctccatcataAGGGTCTACTTCAACCTCCCCCTCCCGGAACGGGTCGTGCGCTACACCTACGAAATGCTGGGCATCAAGCTCGTCATCCGCGGCCACCGCCCTCCGCCGCCGTCTCCGGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCCCTCGACCCCATCGTCATCGCCATCGCCCTCGGCCGCAAGGTTTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCCCGCTTCCTCTCGCCGATCCCCGCCGTGGCCCTCACCCGCGACCGCGCCGCCGACGCCGCCCGCATCACCGAGATCCTCCAGAGGGGCGACCTCGTGGTGTGCCCGGAGGGCACCACGTGTCGCGAGCCCTTCTTGCTGCGCTTTAGCGCCCTCTTCGCCGAGCTCAGCGACAGGATCGTGCCCGTTGCCGTGGACTGCAAGCAGAACATGTTCTATGGGACCACCGTTCGCGGGGTCAAGTTCTGGGACCCTTACTTCTTCTTCATGAATCCTAGGCCCGTTTACGAGGTTACCTTCCTCGACCCCTTGCCGGAGGAGATGTCGTGCAAGGCGGGGGGGAAGACGTCCATTGAGGTGGCCAATCACGTGCAGAAGGTGCTGGGGGATGTGTTGGGGTTCGAGTGCACCGGGTTGACTAGGAAGGATAAGTATATGTTGCTGGGAGGGAATGATGGGAAGGTGGAGTCCCTCTACGGTGCCAAGAAGTGA 1494 0.589 MAKFPPITECNGTSSSPRESIAADLDGTLLISRSSFPYFMLVAVEAGSLLRGLLLLLSTPFVIVAYLFVSESLGIQILIFISFSGLKIRDIELVSRAVLPRFYAADVRKESFEAFDRCKRKVIVTANPTVMVEPFVRDFLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGKWKRVAVLKEFGDETPDIGIGDRSTDHDFMSICKEGYMVPPSKSAKPVPQERLKSRLIFHDGRFVQKPDPLNALITFLWLPFGFILSIIRVYFNLPLPERVVRYTYEMLGIKLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALTRDRAADAARITEILQRGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVDCKQNMFYGTTVRGVKFWDPYFFFMNPRPVYEVTFLDPLPEEMSCKAGGKTSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGAKK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2800 497 Gene3D - 98 225 IPR023214 -
Ssu4g2800 497 Pfam haloacid dehalogenase-like hydrolase 22 201 - -
Ssu4g2800 497 Pfam Acyltransferase 300 390 IPR002123 GO:0016746
Ssu4g2800 497 SMART plsc_2 301 402 IPR002123 GO:0016746
Ssu4g2800 497 PANTHER GLYCEROL-3-PHOSPHATE 2-O-ACYLTRANSFERASE 4 3 496 - -
Ssu4g2800 497 SUPERFAMILY HAD-like 21 214 IPR036412 -
Ssu4g2800 497 PANTHER ANCIENT UBIQUITOUS PROTEIN 3 496 - -
Ssu4g2800 497 CDD LPLAT 277 438 - -
Ssu4g2800 497 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 216 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2800 Ssu-Chr4 71420025 71424995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2800 3 497 Acyl Lipid Metabolism Gene Families AT4G00400 80.202 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2800 K13508 - gmx:100794137 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2800 4 71420025 71424995 Ssu4g2800 4 71420025 71424995 ECH