Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2793 ATGCAAAGGTATCATGCTGGCAGCTGCACTAGTGCAGTTAATAACAGTACAATAGGCGGGCCATCTGCTCGGGACACAGGAAGGTCTGATTCACCTTCTTTGCCAGCTAACTTACCTGTAAGTTCAAGGCGACAACCACCGTTAAACCCATACAAGTTGAAGTGTGATAAAGAACCCTTGAATTCTAGGCTTGGGGCACCAGACTTTCATCCCCAGACACCAAATTGTCCTGAGGAGACTCTGACCAGGGAATATTTGCAATCTGGATACAGGGATACAGTTGAGGGACTTGAGGAAGCTAGAGAAATTTCACTGACCCAGGTTGGCCATTTTAACAAGACAGTTGTTCTTAATTGCAAAGAGGCTATTAGAAAACGTCTGAGGGCCATCAATGAATCTCGTGCTCAGAAGAGGAAGGCTGGTCAAGTATATGGTGTGGCTCTTTCTGGATCACAACTTGCCAGGTCTGGCATTTTCCCTGAACTAAGACCTTGTGGTGAGGACTTCCAGAAGAAATGGATTGAGggTTTATCTCAACAGCACAAGCGATTACGCTCTTTGGCTGATCATGTTCCTCATGGTTATAAAAGGGCATCACTTTTAGAGGTTCTTATCAGGAATAATGTTCCATTGCTGAGGGCCACCTGGTTTATCAAGGTTACTTACCTCAATCAGGTTCGACCTGGTTCTGTTAGTATTTCTTCTGGAACTGCTGACAAGATTCAGCTGTCTCGCTCTGATGTTTGGACCAAAGATGTTATCAATTACTTGCAAACTCTTCTGGATGAATTTTTGTATAAGAATGCTTCCCATTCTGCTTCTCATGGTCGAGAGCGATCACCACAAGTGCCTTATACTGGATCTCTGCAGAATAAAAATGATCCATTATTATCTGTTTCTGATGGTGAAGGGCCATCCTTACATTTTAGATGGTGGTATATTGTGCGGCTTCTGCAATGGAATCATGCTGAAGGGCTGCTGCATCCTTCTCTTGTCATTGATTGGGTGTTTAATCAACTACAGGAGAAAGAACTGCTTGAGGTTTGGCAGCTGTTATTGCCTATTATATATGgttttttagaaactattgtCCTATCTCAAACTTATGTACGCACTCTTGCTGGATTAGCTCTTCATGTCATTCGTGATCCTGCTCCAGGTGGTTCAGATCTAGTAGATAATTCCAGGAGGGCATATACAACTTATGCTGTGATTGAGATGCTCCGGTATTTAATACTTGTGGTGCCAGATACTTTTGTTGCTTTGGATTGCTTTCCTTTACCATCATCTGTAATTTCACATACAATGAATGATGGGAGTTTTGTACTAAAATCAACTGAAGCTGCAGggaagataaaaaatagttcaGATGATTTTGGTCACACTATTTCATGCATTCAGAAACATACAGAAGATCTTGCAAAGGCTGCAAGCCCAGGCTATCCAGGTCATTGTCTGGCTAAAGTTGCAAAAGCCTTGGATAAAGCTCTTGTGCTGGGTGATTTGCGTGTAGCACATAAATTCCTTTTTGAAGATCTTTGTGGTGGAACTGTATCTGAAAGTTGGGTTGCAAAAGTCAGCCCTTGCTTAAGGTTATCTCTGAAATGGTTTGGGACTGTAAATACACCCCTTATATATTCAGTGTTTTTCCTTTGTGAGTGGGCAACGTGTGATTTCAGGGATTTTCGTACTACTCCTCCTCGTGACATAAAGTTTACAGGTAGGAAAGATCTTTCCCAAGTGCATATAGCAGTTAGACTTTTAAAGTTGAAGATGAGGGATTTGAAGATTTCACTAAAACGAACGAATGAAAATCACAGATCCAGTCATTTTGTAAAGAATTCAAGTCAGTGGCATAATTGGAATTATGTTGGTAATGTATCCAAATTGAAATCTAGTTCAAAATGTATGGACCAGAGTACCAGTTCTTCAGTTATATTTGAAAGCCCGGGTCCTCTACATGATATAATAGTTTGTTGGATTGATCAGCATGTGGTGCATAAAGGGGAAGGTCCCAAATGCCTACATCTATTTATAGTGGAACTCATACGGGCAGGCATCTTTTACCCCTTGGCATATGTACGCCAGCTGATAGTGAGCGGAATCATGGATATGAATGTAAATGTGGTTGACCTGGAGCGAAGGAGGAGACACTGTTGCATCTTAAAGCTGCTACCTGGATGCTTTATCCATGATGTTTTGGAAGAATCAGGGATTGTTGAAGGGCTGCACCTCAAAGAAGCCTTGCAAATTTACTTGAATGAACGCCGCCTCATACTTCGGAGTCCTCTGAGTGAGCCCCATGATGATGCCAGTGGTACCAATTTATCTGCTCGGAAGAAAAAACAATATCCAGCTTCTACAAAGGATGAAGCTTCTGCAGTGCCAATTGATCAGAGAAGAACTGTTATTTCTACCACAATATCTTCTAAAAATGCAAAGCATAATGCTAACATTGAAGAACTAAGAACAGCAATCTCATTACTGTTACAGCTACCTAATTGTTTATCTAATTTGAGCACTACAGGTTGTGATGAATCTGGAGGCAATGTTAGAAGACCTATTGGGTCTCATTACAGCAAGAGTGAGCCAGTGGAGGGTACACCTGGTTGTGAAGAATGTAGCAGAGCAAAGAGACAAAAGTTAAGTGAGGATAGAAGCTCATTTGTTCAAGGGCATTCTCCAGTTCAATCTGATGATGATGATACATGGTGGGTGAGAAAGGGAATGAAATCCCCAGAGCCTCTCAAAGTTGATCAACCACAAAAGTCAACCAAGCAGGTCACCAAGAGTCGGCAGAAGAATGTGCGTAAAACTCACAGTCTTGCTCAACTGGCAGCTTCTAGAATTGAGGGTAGCCAAGGGGCATCAACTAGTCATGTGTGTGGTAACAAGGTAAGCTGCCCTCACCATAGAACTGCTATGGATGGAGATGGGCAGAGGTCTGTGGATAGCATCCGAACAAGTCATTTTGGGGATATAGTTTCCATTGGAAAAGCACTAAAGCAGCTACGCTTTGTTGAGAAAAGGGCAATAGCGGTTTGGCTGTTGACTGTTGTTAGGCAGGTAGTTGAAGAGATGGAGAAAAATGTTGGTAAAGTTGGTCAGTTTGGCAGGCCTTTTTCTATTGTGGACGATAAAAGCTCAATAAGGTGGAAACTTGGTGAGGATGAACTTTCTGTGATACTTTATTTGATGGATATCTCCGATGATTTGGTATCAGCTGTTAAGTTCCTCCTTTGGTTGCTGCCAAAGGTTCTTAATAGCCCCAATTCTACAATTCATTCTGGGAGGAATGTGCTGATGCTACCAAGGAATGTGGAAAACCAAGTTTGTGATGTGGGAGAGGCTTTTCTGCTATCGTCACTCAGAAGGTATGAGAACATTCTTGTTGCAGCAGACCTTATTCCTGAAGCTTTGTCATCTGCAATGCATCGTGCTGCCACTGTTATTGCATCTAATGGAAGGGTTTCTGGGTCAGGGACCCTAGCTTTTGCTAgatatttgttgaaaaaatacaGCAATGTGGCTAGTGTCATTGAGTGGGAGAAAACTTTTAAGACTACATGTGATGCAAGACTTTCCTCTGAACTTGAGTCTGGTAGGTCAGTGGATGGAGAGTTGGGGTTGCCCCTAGGAGTTCCGGCTGGAGTTGAGGACCCTGATGATTTTTTCCGTCAGAAGATAAGTGGTGGTCGGTTACCATCCAGAGTAGGTGCAGGCATGAGGGACATAGTGCAGCGTAATGTTGAAGAAGCATTCCACTCTCTTTTTGGAAAAGATAGAAAGCTCTTTGCTGCAGGTACACCAAAAGGTCCTGCTTTAGAAAAATGGGATAATGGATATCAAATTGCTCAACAAATAGTTATGGGTCTGATTGATTGCATAAGGCAGACTGGTGGTGCTGCTCAAGAAGGAGATCCCTCTTTGGTCTCTTCTGCTGTTTCTGCAATTGTTGGCAGTGTTGGTCCAACTTTAGCAAAAATGCCTGATTTTTCATCTGGCAATAATCATTCAAATACAATGTTGGCTACAAATTCATTGAACTATGCCAGATGCATTCTGCGAATGCATATAACCTGTCTATGCCTGCTTAAGGAAGCCCTGGGAGAACGCCAAAGCCGTGTATATGATATTGCTCTTGCTACTGAAGCTTCTACTGTTCTTGCTGGTGTTTTTACTCCTAGTAAAGCATCTCGTACTCAGTTTCAAATGTCTCCTGAAGCCCATGATTCTAGTAACACTATTTCAAATGATATGGGAAGCAACTCTAATAAAGTTGTGGttgcaaaaacaacaaaaattgctGCTGCTGTTTCTGCACTTCTTGTTGGTGCAATTATATATGGTGTTACCAGCCTGGAAAGAATGGTGACAGTTCTCAGATTAAAGGAGGGGCTGGATGTAGTACAATTTGTAAGAAGCACTAGATCCAATTCAAATGGAAATGCTCGTTCAGTTATGGCTTTTAAGGTGGATAGTTCAATTGAAGTTCATGCCCATTGGTTTAGATTGCTTGTAGGAAACTGTAGAACGATCTGCGAAGGGTTAGTGGTGGAACTCTTGGGTGAACCATCTATTCTCGCTCTTTCAAGAATGCAACGTATGCTTCCTCTAAATTTGGTCTTTCCACCTGCCTATTCAATATTTGCCTTTGTTAAGTGGCGGCCTTTCATTCTGAATGCTACAGTCCGTGAAGACATGAATCAAAATTTTCAGTCTCTTACAATGGCCATAACTGATGCAATAAAACATTTGCCATTTCGAGATGTATGTTTTAGAGACTGTCAGGGTCTTTATGATCTTATGGTTGAAGACGCAAGTGATTCTGAATTTGCAAACTTGCTAGAGTTCAATGGGTCCGATATGCATTTAAAATCCACAGCATTTGTTCCTCTACGCTCTAGGCTTTTTCTGAATGCCATGATTGATTGTAAGATGCCACAATCTATTTATACAAAGGATGATGGGAGCCGAATTTCTGGACCTGGTGagtctaaaattaaattcacagaTAGTGAGTCTAAGCTTCAGGATATGCTTGTGCATGTTTTGGATAGCTTGCAACCTGCCAAATTTCACTGGCAGTGGGTTGCACTCAGGTTACTTTTAAATGAACAAGCCCTTATTGAAAAACTGGAGACTCATGATGTGTCCTTAGCTGATGCTATAAAGTTGTCCTCACCTAGTCCAGAGAAGGCTGCTGCTGCTTCTGAGAATGagaacaattttattcaaatacttCTCACAAGGTTACTGGTTAGACCTGATGCTGCACCCCTTTTTTCAGAGTTGATTCATCTCTTTGGTAGGTCACTAGAGGATTCAATGTTGTTGCAAGCTAAATGGTTCCTTGGAGGCCAGGATGTCCTCTTTGGTCGGAAGACCATTAGACAAAGGCTACATAACATAGCTGAGAGTAAAGGACTTTCTGTTAAGACCCAATTTTGGAAGCCATGGGGTTGTAGTCCGTGTACTGATCGATTGAGTATCAAAAGGGATAAAAAGAAGTTTGATAGCACATCTCTTGaagaaggagaagttgttgaAGAGGGAGTGGATTTGAAAAGGTGCCTTAGAGGGTTGTCTCAAGTGTCTGACTCTGAAAGCTGTAACCAGCAACAAGTGACTGAGAGGGCTCTTATTGAGTTGCTTCTTCCTTGCATAGATCAAAGCTCTGATGAATCCCGCAATTCCTTTGCCAATGATTTGGTGAAACAGTTGAGTCATATTGAGCAACAAATAACTGCTGTTACAGGTGGAAGTAAACCAGTGGGAAGTGCTCCTCCTGGAGTTGAAGGTCAgccaaataaagtaaataaccGCAAAAGCATGAGAGGTGGAAGCCCTGCATTAGCTAGGCGACCGACAGTGGCAGTAGATTCTTCTCCACCATCTCCTGCAGGCCTACGAGCTTCTATGTCATTACGTTTGCAGTTGCTCCTGAGATTTCTTCCTGTTCTTTGCACTGACAGGGAGCCATCTGTGCGGAGCATGAGACAATTTCTTGCCACTGTAATTTTTCGTCTCCTTGGTAGCCGGATTGTGCATGAGGATGCAGATATTTTGGGGAATGCTGTGCCATCTCTGCCAAGGAGGGAGGCAGAGCCATCTTCTGAAGTTGCTTCTGCTGCTTTTGTGGATTCTTCTTCTGGGAGTCTTTTTGATCGTTTGTTGCTGGTTTTGCATGGGTTGTTAAGTAGTTATCCTCCAAGTTGGCTTAGGCCAAAGCCTGTTTCAAAGATGACCAATGAACCTACgagggaattttctggaattgaCCGAGAATTGTTGGAGACTTTGCAGAATGACTTGGATCGTATGCAACTGCCAGACACTATTCGGTGGCATATCCAAGCTGCAATGCCCATACTCATCTCCTCTATGCGGTGCTCTTTAGCCTGCCAGCCACCATCTGTTTCAAATGCTGCTATTGTTTGCCTTCAACCCAGCATTACAAATCCTGGGGTTAACTCCAGTAGTTCAACTATCCCTCAGAGGAACCCGGTTCTATCAAGGGTTGCATCTAATGCATCAGGGAAGTCAAAACAACAGGACAATGATCTGGAAATCGATCCTTGGACGCTCTTAGAAGATGGCGCTGGATCTTACCCTTCGGCAGGTAATACTGCTAGCATAGGAAGTGGTGACCATGTTAACATTCGAGCTGCCAGCTGGCTTAAAGGGGCCATAAGGGTGAGGCGGACAGACCTCACATATGTTGGTGCCGTGGATGACGATAGTTGA 6747 0.4196 MQRYHAGSCTSAVNNSTIGGPSARDTGRSDSPSLPANLPVSSRRQPPLNPYKLKCDKEPLNSRLGAPDFHPQTPNCPEETLTREYLQSGYRDTVEGLEEAREISLTQVGHFNKTVVLNCKEAIRKRLRAINESRAQKRKAGQVYGVALSGSQLARSGIFPELRPCGEDFQKKWIEGLSQQHKRLRSLADHVPHGYKRASLLEVLIRNNVPLLRATWFIKVTYLNQVRPGSVSISSGTADKIQLSRSDVWTKDVINYLQTLLDEFLYKNASHSASHGRERSPQVPYTGSLQNKNDPLLSVSDGEGPSLHFRWWYIVRLLQWNHAEGLLHPSLVIDWVFNQLQEKELLEVWQLLLPIIYGFLETIVLSQTYVRTLAGLALHVIRDPAPGGSDLVDNSRRAYTTYAVIEMLRYLILVVPDTFVALDCFPLPSSVISHTMNDGSFVLKSTEAAGKIKNSSDDFGHTISCIQKHTEDLAKAASPGYPGHCLAKVAKALDKALVLGDLRVAHKFLFEDLCGGTVSESWVAKVSPCLRLSLKWFGTVNTPLIYSVFFLCEWATCDFRDFRTTPPRDIKFTGRKDLSQVHIAVRLLKLKMRDLKISLKRTNENHRSSHFVKNSSQWHNWNYVGNVSKLKSSSKCMDQSTSSSVIFESPGPLHDIIVCWIDQHVVHKGEGPKCLHLFIVELIRAGIFYPLAYVRQLIVSGIMDMNVNVVDLERRRRHCCILKLLPGCFIHDVLEESGIVEGLHLKEALQIYLNERRLILRSPLSEPHDDASGTNLSARKKKQYPASTKDEASAVPIDQRRTVISTTISSKNAKHNANIEELRTAISLLLQLPNCLSNLSTTGCDESGGNVRRPIGSHYSKSEPVEGTPGCEECSRAKRQKLSEDRSSFVQGHSPVQSDDDDTWWVRKGMKSPEPLKVDQPQKSTKQVTKSRQKNVRKTHSLAQLAASRIEGSQGASTSHVCGNKVSCPHHRTAMDGDGQRSVDSIRTSHFGDIVSIGKALKQLRFVEKRAIAVWLLTVVRQVVEEMEKNVGKVGQFGRPFSIVDDKSSIRWKLGEDELSVILYLMDISDDLVSAVKFLLWLLPKVLNSPNSTIHSGRNVLMLPRNVENQVCDVGEAFLLSSLRRYENILVAADLIPEALSSAMHRAATVIASNGRVSGSGTLAFARYLLKKYSNVASVIEWEKTFKTTCDARLSSELESGRSVDGELGLPLGVPAGVEDPDDFFRQKISGGRLPSRVGAGMRDIVQRNVEEAFHSLFGKDRKLFAAGTPKGPALEKWDNGYQIAQQIVMGLIDCIRQTGGAAQEGDPSLVSSAVSAIVGSVGPTLAKMPDFSSGNNHSNTMLATNSLNYARCILRMHITCLCLLKEALGERQSRVYDIALATEASTVLAGVFTPSKASRTQFQMSPEAHDSSNTISNDMGSNSNKVVVAKTTKIAAAVSALLVGAIIYGVTSLERMVTVLRLKEGLDVVQFVRSTRSNSNGNARSVMAFKVDSSIEVHAHWFRLLVGNCRTICEGLVVELLGEPSILALSRMQRMLPLNLVFPPAYSIFAFVKWRPFILNATVREDMNQNFQSLTMAITDAIKHLPFRDVCFRDCQGLYDLMVEDASDSEFANLLEFNGSDMHLKSTAFVPLRSRLFLNAMIDCKMPQSIYTKDDGSRISGPGESKIKFTDSESKLQDMLVHVLDSLQPAKFHWQWVALRLLLNEQALIEKLETHDVSLADAIKLSSPSPEKAAAASENENNFIQILLTRLLVRPDAAPLFSELIHLFGRSLEDSMLLQAKWFLGGQDVLFGRKTIRQRLHNIAESKGLSVKTQFWKPWGCSPCTDRLSIKRDKKKFDSTSLEEGEVVEEGVDLKRCLRGLSQVSDSESCNQQQVTERALIELLLPCIDQSSDESRNSFANDLVKQLSHIEQQITAVTGGSKPVGSAPPGVEGQPNKVNNRKSMRGGSPALARRPTVAVDSSPPSPAGLRASMSLRLQLLLRFLPVLCTDREPSVRSMRQFLATVIFRLLGSRIVHEDADILGNAVPSLPRREAEPSSEVASAAFVDSSSGSLFDRLLLVLHGLLSSYPPSWLRPKPVSKMTNEPTREFSGIDRELLETLQNDLDRMQLPDTIRWHIQAAMPILISSMRCSLACQPPSVSNAAIVCLQPSITNPGVNSSSSTIPQRNPVLSRVASNASGKSKQQDNDLEIDPWTLLEDGAGSYPSAGNTASIGSGDHVNIRAASWLKGAIRVRRTDLTYVGAVDDDS 2248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 764 795 - -
Ssu4g2793 2248 Pfam Transcription mediator complex subunit Med12 160 219 IPR019035 GO:0003712|GO:0006357|GO:0016592
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 900 914 - -
Ssu4g2793 2248 Coils Coil 585 605 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 872 886 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 768 782 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 1 77 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 845 939 - -
Ssu4g2793 2248 SMART Med12_2 158 219 IPR019035 GO:0003712|GO:0006357|GO:0016592
Ssu4g2793 2248 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 1 2248 - -
Ssu4g2793 2248 PANTHER RNA POLYMERASE II TRANSCRIPTION MEDIATORS PROTEIN 1 2248 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 1 44 - -
Ssu4g2793 2248 MobiDBLite consensus disorder prediction 1920 1966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2793 Ssu-Chr4 71208652 71224913 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2793 - - gmx:100781696 3924.4