Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2787 ATGAAGACAGGAATTCTCGAAGTACTCCTTGTTAATGCTAAAGGCATTACACACACAAACCTTGTTGGAACACCTTCCTACTATGTGGTTATTGAGTGCGGGACTCAGACTCAAAGAAGCAAAGTTTCACCAGGAAAACATGAGAAACCATGTTGGAATGAGAAATTCGTGTTTGATTTCTCACCGTTTGATTGCAAGAATTCAACCCATCTTAAGTGTAGAATCATGGACACAGAACTCTTCACAAATGGTGGATTTGTTGGTGAAGCCAAGATTTACATAGGTGGAATAATCTCTGAAGGAACTGACCAGggatatatagaaataaaaccAGCAGCATATAATGTGGTCCTTGAAGATGACACTTACAAAGGCCAGATAAAGATTGGATTTAAGTTCATTGCAAATAAAGAAAAGTACGTGATGGGGAAACGGGATCAATTCGTTGCCGAGAAGAAAGAACCGCGCCATTCAATTTGTGGATGCATTTGGAGAATATCATGGTGGAAAATCTTGTTTTTCTATCGAAAGAAAAGTTTCAAAGACAAACAGAAGACGAATTAG 564 0.3759 MKTGILEVLLVNAKGITHTNLVGTPSYYVVIECGTQTQRSKVSPGKHEKPCWNEKFVFDFSPFDCKNSTHLKCRIMDTELFTNGGFVGEAKIYIGGIISEGTDQGYIEIKPAAYNVVLEDDTYKGQIKIGFKFIANKEKYVMGKRDQFVAEKKEPRHSICGCIWRISWWKILFFYRKKSFKDKQKTN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2787 187 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 134 IPR035892 -
Ssu4g2787 187 Gene3D C2 domain 2 135 IPR035892 -
Ssu4g2787 187 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Ssu4g2787 187 PANTHER C2 DOMAIN-CONTAINING 1 186 - -
Ssu4g2787 187 Pfam C2 domain 4 100 IPR000008 -
Ssu4g2787 187 SMART C2_3c 5 106 IPR000008 -
Ssu4g2787 187 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2787 Ssu-Chr4 71093661 71095052 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2787 - - gmx:100782233 346.665