Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2781 ATGGGGAGCGCGATTGACACAGCAGTGGAGCTAGGGAGTGAGATTAGGGCAGGGGTGGGGGTGGGGGTAGAGAGCGAGATCGACGAGGTGGTGAGGGTGGGGAGTGAGACTGACACGACAATGGAGGTAGGGAGACGAATCCCTAGTTTCGTCACAGGTCCTCTGTACTATCCAATGGAGCATGTAGATGATGGAGAAGAATCATCAAATAGTGTCAATGAAGTAGAAGTCACTAATTCTCCACTTATTTGTGGCCTTCCAGATGATATTTCTCTTATGTGCCTGGCAAGAGTTCCTAGAAAGTATCATTCAGTCCTGAAGTGTGTCTCAAAGAGATGGAGGGACTTAATTTCCAGTGAAGAGTGGCATTGTTATCGCCGAAAGCATAAACTTGATGAGGCCTGGATTTATGCTTTGTGCAGGgacaaattaaatgagattttCTGTTATGTTTTGGATCCAACCTCAAGAAGAGATTGGAAGCTCATTGATGGTCTTCCACCTCACatctcaaaaagaaaaggcatgGGTTTTGAAGCTTTGGGAAATAAGCTATTTTTGTTGGGTGGTTGTAGCTGGATTCGAAATGCTACTGATGAGGTTTATTCATACAATGCTTCCTCAAATTGTTGGGTTGAAGCTAGTTCCATGTCAACTGCTAGGTGCTTCTTTGCTTGTGaagttttggatgaaaaactaTATGCTATCGGTGGAATAGATTCAAATTCAAGTGATTTTCATTCGTGGGATACTTTTGACCCTTTGACAAATTGTTGGTCATCTCATAGAGATCCTAATATTGTTGCTGATATTGAAGATTCAGTAGTTCTTGATGGGAAGATATACATCCGATGTGGCAGATATCCTGTAACTCCTCATGTATATGCTACTGTATATGAACCATCAAGTGGCACATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAAAGGTCCTGCAGTTGTTGTTGATGGGACCCTTTTTGTTTTGGATCAGAGTTTGGGAGCTAGGTTAATGATGTGGCATAAAGAGAGACGCGAGTGGATACCTGTTGGAAAGCTATCACCATTGCTTACTAGACCACCCTGTCAGCTTGCTGCAGTTGGTAAAAGCATTTTTATTGTTGGGAAAGGACTTAGCACTGTGGTTGTTGATGTTGGTGATTTGGGGTATGGGGATCATGTGATAATGGGTTCTTCTATACCCAGAGCATTGTCTAATTTCGatgtaataaaatgtaaatgCTTGTCAATCTGA 1260 0.4103 MGSAIDTAVELGSEIRAGVGVGVESEIDEVVRVGSETDTTMEVGRRIPSFVTGPLYYPMEHVDDGEESSNSVNEVEVTNSPLICGLPDDISLMCLARVPRKYHSVLKCVSKRWRDLISSEEWHCYRRKHKLDEAWIYALCRDKLNEIFCYVLDPTSRRDWKLIDGLPPHISKRKGMGFEALGNKLFLLGGCSWIRNATDEVYSYNASSNCWVEASSMSTARCFFACEVLDEKLYAIGGIDSNSSDFHSWDTFDPLTNCWSSHRDPNIVADIEDSVVLDGKIYIRCGRYPVTPHVYATVYEPSSGTWQHADADMVSGWKGPAVVVDGTLFVLDQSLGARLMMWHKERREWIPVGKLSPLLTRPPCQLAAVGKSIFIVGKGLSTVVVDVGDLGYGDHVIMGSSIPRALSNFDVIKCKCLSI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2781 419 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 71 395 - -
Ssu4g2781 419 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 71 395 - -
Ssu4g2781 419 Pfam F-box domain 84 124 IPR001810 GO:0005515
Ssu4g2781 419 Gene3D - 132 390 IPR015915 GO:0005515
Ssu4g2781 419 Pfam Kelch motif 173 218 IPR006652 GO:0005515
Ssu4g2781 419 Pfam Kelch motif 220 260 IPR006652 GO:0005515
Ssu4g2781 419 SMART kelc_smart 232 279 IPR006652 GO:0005515
Ssu4g2781 419 SMART kelc_smart 184 231 IPR006652 GO:0005515
Ssu4g2781 419 SMART fbox_2 86 125 IPR001810 GO:0005515
Ssu4g2781 419 SUPERFAMILY Kelch motif 147 379 IPR015915 GO:0005515
Ssu4g2781 419 SUPERFAMILY F-box domain 80 161 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2781 Ssu-Chr4 70870721 70879962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2781 86 360 Miscellaneous Gene Families AT4G33900 27.333 6.53e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2781 - - gmx:100798211 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2781 4 70870721 70879962 Ssu4g2781 4 70870721 70879962 ECH